2D04 | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	111
structure length	111
Chain Sequence	DSVLLSGQTLYAGHSLTSGSYTLTIQNNCNLVKYQHGRQIWASDTDGQGSQCRLTLRSDGNLIIYDDNNMVVWGSDCWGNNGTYALVLQQDGLFVIYGPVLWPLGLNGCRS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Plant protein
publication title	Crystal structure of neoculin: insights into its sweetness and taste-modifying activity pubmed doi rcsb
molecule keywords	neoculin acidic subunit
total genus	20
structure length	111
sequence length	111
chains with identical sequence	C, E, G
ec nomenclature
pdb deposition date	2005-07-25

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	2d04A00

3A0EA 2D04B 1XD6A 1BWUQ 4H3OA 1MSAA 3M7HA 3A0CA 4TKCA 5D5GB 5J76B 1KJ1D 1BWUP 3R0EA 4GC1A 5T1XB 1B2PA 5D9ZB 3MEZA 1BWUA 5T20A 2D04A 3DZWA 4GC2A 5D5GA 5J76A 3A0DA 1NPLA 4PDTA 3M7JA 1BWUD 5T1XA 2DPFA 5D9ZA 3R0EB 1JPCA 1XD5A 1KJ1A 3MEZB 1NIVA 5T20B 1DLPA
chains in the Genus database with same CATH superfamily

3A0EA 4LE7A 2D04B 1XD6A 1BWUQ 4H3OA 1MSAA 3M7HA 3A0CA 4TKCA 5D5GB 5J76B 1KJ1D 1BWUP 3R0EA 4GC1A 4LEAA 5T1XB 1B2PA 5D9ZB 3MEZA 1BWUA 5T20A 2D04A 3DZWA 4OKCA 4GC2A 5D5GA 5J76A 3A0DA 4OITA 1NPLA 4PDTA 3M7JA 1BWUD 5T1XA 2DPFA 5D9ZA 3R0EB 4OIZA 1JPCA 1XD5A 4LEDA 1KJ1A 3MEZB 1NIVA 5T20B 1DLPA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3A0E A;  2D04 B;  1XD6 A;  1BWU Q;  4H3O A;  1MSA A;  3M7H A;  3A0C A;  4TKC A;  5D5G B;  5J76 B;  1KJ1 D;  1BWU P;  3R0E A;  4GC1 A;  5T1X B;  1B2P A;  5D9Z B;  3MEZ A;  1BWU A;  5T20 A;  2D04 A;  3DZW A;  4GC2 A;  5D5G A;  5J76 A;  3A0D A;  1NPL A;  4PDT A;  3M7J A;  1BWU D;  5T1X A;  2DPF A;  5D9Z A;  3R0E B;  1JPC A;  1XD5 A;  1KJ1 A;  3MEZ B;  1NIV A;  5T20 B;  1DLP A; 
#chains in the Genus database with same CATH topology
 3A0E A;  4LE7 A;  2D04 B;  1XD6 A;  1BWU Q;  4H3O A;  1MSA A;  3M7H A;  3A0C A;  4TKC A;  5D5G B;  5J76 B;  1KJ1 D;  1BWU P;  3R0E A;  4GC1 A;  4LEA A;  5T1X B;  1B2P A;  5D9Z B;  3MEZ A;  1BWU A;  5T20 A;  2D04 A;  3DZW A;  4OKC A;  4GC2 A;  5D5G A;  5J76 A;  3A0D A;  4OIT A;  1NPL A;  4PDT A;  3M7J A;  1BWU D;  5T1X A;  2DPF A;  5D9Z A;  3R0E B;  4OIZ A;  1JPC A;  1XD5 A;  4LED A;  1KJ1 A;  3MEZ B;  1NIV A;  5T20 B;  1DLP A; 
#chains in the Genus database with same CATH homology
 3A0E A;  2D04 B;  1XD6 A;  1BWU Q;  4H3O A;  1MSA A;  3M7H A;  3A0C A;  4TKC A;  5D5G B;  5J76 B;  1KJ1 D;  1BWU P;  3R0E A;  4GC1 A;  5T1X B;  1B2P A;  5D9Z B;  3MEZ A;  1BWU A;  5T20 A;  2D04 A;  3DZW A;  4GC2 A;  5D5G A;  5J76 A;  3A0D A;  1NPL A;  4PDT A;  3M7J A;  1BWU D;  5T1X A;  2DPF A;  5D9Z A;  3R0E B;  1JPC A;  1XD5 A;  1KJ1 A;  3MEZ B;  1NIV A;  5T20 B;  1DLP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2D04A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN