The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
86
|
sequence length |
261
|
structure length |
261
|
Chain Sequence |
SQGVIGIFGDYAKAHDLAVGEVSKLVKKALSNEYPQLSFRYRDSIKKTEINEALKKIDPDLGGTLFVSNSSIKPDGGIVEVKDDYGEWRVVLVAEAKHQGKDIINIRNGLLVGKRGDQDLMTAGNAIERSHKNISEIANFMLSESHFPYVLFLEGSNFLTENISITRPDGRVVNLEYNSGILNRLDRLTAANYGMPINSNLCINKFVNHKDKSIMLQAASIYTQGDGREWDSKIMFEIMFDISTTSLRVLGRDLFEQLTSK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase/dna
|
| molecule keywords |
DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
|
| publication title |
Structural and thermodynamic basis for enhanced DNA binding by a promiscuous mutant EcoRI endonuclease.
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| total genus |
86
|
| structure length |
261
|
| sequence length |
261
|
| ec nomenclature |
ec
3.1.21.4: Type II site-specific deoxyribonuclease. |
| pdb deposition date | 2007-02-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02963 | EcoRI | Restriction endonuclease EcoRI |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | ECO RI Endonuclease; Chain A | Eco RI Endonuclease, subunit A |
#chains in the Genus database with same CATH superfamily 1QPS A; 1QRI A; 2OXV A; 1QRH A; 1CL8 A; 1D02 A; 1QC9 A; 1CKQ A; 1ERI A; #chains in the Genus database with same CATH topology 1QPS A; 1QRI A; 2OXV A; 1QRH A; 1CL8 A; 1D02 A; 1QC9 A; 1CKQ A; 1ERI A; #chains in the Genus database with same CATH homology 1QPS A; 1QRI A; 2OXV A; 1QRH A; 1CL8 A; 1D02 A; 1QC9 A; 1CKQ A; 1ERI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
