The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
15
|
sequence length |
63
|
structure length |
63
|
Chain Sequence |
ATETATRDQLTKEAFQNPDNQKVNIDELGNAIPSGVLKDDVVANIEEQAKAAGEEAKQQAIEN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural insight into the interaction between intimin and Tir of enterohaemorrhagic E coli: evidence for a dynamic sequential clustering-aggregating-reticulating model
rcsb |
| molecule tags |
Cell adhesion
|
| source organism |
Escherichia coli
|
| molecule keywords |
Intimin
|
| total genus |
15
|
| structure length |
63
|
| sequence length |
63
|
| chains with identical sequence |
D, F
|
| ec nomenclature | |
| pdb deposition date | 2008-12-16 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Few Secondary Structures | Irregular | Translocated Intimin Receptor; Chain T | Translocated intimin receptor, central domain |
#chains in the Genus database with same CATH superfamily 2ZQK C; 2ZWK B; 1F02 T; #chains in the Genus database with same CATH topology 2ZQK C; 2ZWK B; 1F02 T; #chains in the Genus database with same CATH homology 2ZQK C; 2ZWK B; 1F02 T;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
