3A8L | Genus

Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	58
sequence length	197
structure length	195
Chain Sequence	ENAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCSLATAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 195 atoms

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195 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Rhodococcus erythropolis
publication title	Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase pubmed doi rcsb
molecule keywords	Nitrile hydratase subunit alpha
total genus	58
structure length	195
sequence length	197
ec nomenclature	ec 4.2.1.84: Nitrile hydratase.
pdb deposition date	2009-10-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02979	NHase_alpha	Nitrile hydratase, alpha chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase; Chain A	Nitrile hydratase alpha /Thiocyanate hydrolase gamma	3a8lA00

1AHJA 3A8MA 2DD4C 2ZPBA 1UGQA 2ZPEA 3WVDA 4ZGDA 2ZPHA 4OB3A 2CZ1A 2CZ6A 1V29A 2DPPA 2DXCC 2ZZDC 2DD5C 3VYGC 4OB1A 3QZ9A 4OB2A 4ZGJA 2ZCFA 3X28A 3X24A 4OB0A 2CZ7A 2QDYA 1UGRA 1UGSA 3A8LA 3A8GA 2AHJA 3QZ5A 3X25A 1UGPA 2ZPFA 3WVEA 2ZPGA 3HHTA 2CYZA 4FM4A 1IREA 3VYHA 3A8OA 2DXBC 2ZPIA 2CZ0A 3QYGA 3A8HA 3QYHA 3X20A 3X26A 4ZGEA 3QXEA 2D0QA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1AHJ A;  3A8M A;  2DD4 C;  2ZPB A;  1UGQ A;  2ZPE A;  3WVD A;  4ZGD A;  2ZPH A;  4OB3 A;  2CZ1 A;  2CZ6 A;  1V29 A;  2DPP A;  2DXC C;  2ZZD C;  2DD5 C;  3VYG C;  4OB1 A;  3QZ9 A;  4OB2 A;  4ZGJ A;  2ZCF A;  3X28 A;  3X24 A;  4OB0 A;  2CZ7 A;  2QDY A;  1UGR A;  1UGS A;  3A8L A;  3A8G A;  2AHJ A;  3QZ5 A;  3X25 A;  1UGP A;  2ZPF A;  3WVE A;  2ZPG A;  3HHT A;  2CYZ A;  4FM4 A;  1IRE A;  3VYH A;  3A8O A;  2DXB C;  2ZPI A;  2CZ0 A;  3QYG A;  3A8H A;  3QYH A;  3X20 A;  3X26 A;  4ZGE A;  3QXE A;  2D0Q A; 
#chains in the Genus database with same CATH topology
 1AHJ A;  3A8M A;  2DD4 C;  2ZPB A;  1UGQ A;  2ZPE A;  3WVD A;  4ZGD A;  2ZPH A;  4OB3 A;  2CZ1 A;  2CZ6 A;  1V29 A;  2DPP A;  2DXC C;  2ZZD C;  2DD5 C;  3VYG C;  4OB1 A;  3QZ9 A;  4OB2 A;  4ZGJ A;  2ZCF A;  3X28 A;  3X24 A;  4OB0 A;  2CZ7 A;  2QDY A;  1UGR A;  1UGS A;  3A8L A;  3A8G A;  2AHJ A;  3QZ5 A;  3X25 A;  1UGP A;  2ZPF A;  3WVE A;  2ZPG A;  3HHT A;  2CYZ A;  4FM4 A;  1IRE A;  3VYH A;  3A8O A;  2DXB C;  2ZPI A;  2CZ0 A;  3QYG A;  3A8H A;  3QYH A;  3X20 A;  3X26 A;  4ZGE A;  3QXE A;  2D0Q A; 
#chains in the Genus database with same CATH homology
 1AHJ A;  3A8M A;  2DD4 C;  2ZPB A;  1UGQ A;  2ZPE A;  3WVD A;  4ZGD A;  2ZPH A;  4OB3 A;  2CZ1 A;  2CZ6 A;  1V29 A;  2DPP A;  2DXC C;  2ZZD C;  2DD5 C;  3VYG C;  4OB1 A;  3QZ9 A;  4OB2 A;  4ZGJ A;  2ZCF A;  3X28 A;  3X24 A;  4OB0 A;  2CZ7 A;  2QDY A;  1UGR A;  1UGS A;  3A8L A;  3A8G A;  2AHJ A;  3QZ5 A;  3X25 A;  1UGP A;  2ZPF A;  3WVE A;  2ZPG A;  3HHT A;  2CYZ A;  4FM4 A;  1IRE A;  3VYH A;  3A8O A;  2DXB C;  2ZPI A;  2CZ0 A;  3QYG A;  3A8H A;  3QYH A;  3X20 A;  3X26 A;  4ZGE A;  3QXE A;  2D0Q A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3A8LA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations