3A8O | Genus

Total Genus 58

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	58
sequence length	197
structure length	195
Chain Sequence	ENAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCSLSTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Rhodococcus erythropolis
publication title	Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase pubmed doi rcsb
molecule keywords	Nitrile hydratase subunit alpha
total genus	58
structure length	195
sequence length	197
ec nomenclature	ec 4.2.1.84: Nitrile hydratase.
pdb deposition date	2009-10-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02979	NHase_alpha	Nitrile hydratase, alpha chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase; Chain A	Nitrile hydratase alpha /Thiocyanate hydrolase gamma	3a8oA00

4FM4A 3A8MA 3HHTA 3QZ9A 1UGRA 2DXBC 3A8LA 3A8HA 3QYGA 2QDYA 3QZ5A 3QYHA 3WVEA 2DXCC 2ZPHA 2DD4C 3X24A 1UGSA 2CZ1A 2CZ6A 3VYGC 1IREA 1UGPA 4ZGJA 4OB1A 3QXEA 2DPPA 1V29A 4OB2A 4ZGDA 3WVDA 1AHJA 2AHJA 4ZGEA 4OB0A 4OB3A 3X20A 2CYZA 2ZPEA 3A8OA 2ZPIA 3VYHA 2CZ0A 2ZPFA 2ZZDC 3X25A 1UGQA 2ZPBA 2ZPGA 3X28A 3A8GA 2D0QA 2ZCFA 3X26A 2DD5C 2CZ7A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4FM4 A;  3A8M A;  3HHT A;  3QZ9 A;  1UGR A;  2DXB C;  3A8L A;  3A8H A;  3QYG A;  2QDY A;  3QZ5 A;  3QYH A;  3WVE A;  2DXC C;  2ZPH A;  2DD4 C;  3X24 A;  1UGS A;  2CZ1 A;  2CZ6 A;  3VYG C;  1IRE A;  1UGP A;  4ZGJ A;  4OB1 A;  3QXE A;  2DPP A;  1V29 A;  4OB2 A;  4ZGD A;  3WVD A;  1AHJ A;  2AHJ A;  4ZGE A;  4OB0 A;  4OB3 A;  3X20 A;  2CYZ A;  2ZPE A;  3A8O A;  2ZPI A;  3VYH A;  2CZ0 A;  2ZPF A;  2ZZD C;  3X25 A;  1UGQ A;  2ZPB A;  2ZPG A;  3X28 A;  3A8G A;  2D0Q A;  2ZCF A;  3X26 A;  2DD5 C;  2CZ7 A; 
#chains in the Genus database with same CATH topology
 4FM4 A;  3A8M A;  3HHT A;  3QZ9 A;  1UGR A;  2DXB C;  3A8L A;  3A8H A;  3QYG A;  2QDY A;  3QZ5 A;  3QYH A;  3WVE A;  2DXC C;  2ZPH A;  2DD4 C;  3X24 A;  1UGS A;  2CZ1 A;  2CZ6 A;  3VYG C;  1IRE A;  1UGP A;  4ZGJ A;  4OB1 A;  3QXE A;  2DPP A;  1V29 A;  4OB2 A;  4ZGD A;  3WVD A;  1AHJ A;  2AHJ A;  4ZGE A;  4OB0 A;  4OB3 A;  3X20 A;  2CYZ A;  2ZPE A;  3A8O A;  2ZPI A;  3VYH A;  2CZ0 A;  2ZPF A;  2ZZD C;  3X25 A;  1UGQ A;  2ZPB A;  2ZPG A;  3X28 A;  3A8G A;  2D0Q A;  2ZCF A;  3X26 A;  2DD5 C;  2CZ7 A; 
#chains in the Genus database with same CATH homology
 4FM4 A;  3A8M A;  3HHT A;  3QZ9 A;  1UGR A;  2DXB C;  3A8L A;  3A8H A;  3QYG A;  2QDY A;  3QZ5 A;  3QYH A;  3WVE A;  2DXC C;  2ZPH A;  2DD4 C;  3X24 A;  1UGS A;  2CZ1 A;  2CZ6 A;  3VYG C;  1IRE A;  1UGP A;  4ZGJ A;  4OB1 A;  3QXE A;  2DPP A;  1V29 A;  4OB2 A;  4ZGD A;  3WVD A;  1AHJ A;  2AHJ A;  4ZGE A;  4OB0 A;  4OB3 A;  3X20 A;  2CYZ A;  2ZPE A;  3A8O A;  2ZPI A;  3VYH A;  2CZ0 A;  2ZPF A;  2ZZD C;  3X25 A;  1UGQ A;  2ZPB A;  2ZPG A;  3X28 A;  3A8G A;  2D0Q A;  2ZCF A;  3X26 A;  2DD5 C;  2CZ7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3A8OA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations