3BK5 | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	236
structure length	235
Chain Sequence	NAEKGLEIAQERKARDEGWGDSIATMEMILKNAQESSTRLMRLKSLEVEGDGDKGLTIFDQPRDVTGTAFLNHSHTIGADDQWLYLPALKRVKRISSRNKSGPFMGSEFAYEDLSSFEIEKYRFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLDKAHYRPLKVEFYDRKGALLKTLTFANYKQYLDKYWRAHTMAMTNHQTGKSTELNTSDLRFQTGLEENDFNKNVLKR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 235 atoms

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235 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The crystal structure of putative outer membrane lipoprotein-sorting protein domain from Vibrio parahaemolyticus. rcsb
molecule keywords	putative outer membrane lipoprotein-sorting protein
molecule tags	Structural genomics, unknown function
source organism	Vibrio parahaemolyticus rimd 2210633
total genus	57
structure length	235
sequence length	236
ec nomenclature
pdb deposition date	2007-12-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF17131	LolA_like	Outer membrane lipoprotein-sorting protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.10	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	Lipoprotein localisation LolA/LolB/LppX	3bk5A00

3WJTA 2P4BA 3WJVA 1UA8A 4MXTA 3KSNA 3M4WA 2V43A 1IWLA 4KI3A 2ZPDA 3BUUA 3WJUA 2V42A 3BK5A 2ZPCA 2YZYA 1IWNA 4Z48A 2W7QA 1IWMA
chains in the Genus database with same CATH superfamily

3BMZA 3MH8A 3WJTA 2P4BA 2ZF3A 3MHAA 2ZF4A 3WJVA 1UA8A 4MXTA 3KSNA 3M4WA 2V43A 1IWLA 3MH9A 2ZPDA 4KI3A 3BUUA 4ZRAA 3WJUA 2V42A 3BK5A 2ZPCA 2YZYA 4EGDA 4QA8A 1IWNA 4Z48A 2W7QA 2BYOA 1IWMA 4EG9A
chains in the Genus database with same CATH topology

3WJTA 2P4BA 3WJVA 1UA8A 4MXTA 3KSNA 3M4WA 2V43A 1IWLA 4KI3A 2ZPDA 3BUUA 3WJUA 2V42A 3BK5A 2ZPCA 2YZYA 1IWNA 4Z48A 2W7QA 1IWMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3WJT A;  2P4B A;  3WJV A;  1UA8 A;  4MXT A;  3KSN A;  3M4W A;  2V43 A;  1IWL A;  4KI3 A;  2ZPD A;  3BUU A;  3WJU A;  2V42 A;  3BK5 A;  2ZPC A;  2YZY A;  1IWN A;  4Z48 A;  2W7Q A;  1IWM A; 
#chains in the Genus database with same CATH topology
 3BMZ A;  3MH8 A;  3WJT A;  2P4B A;  2ZF3 A;  3MHA A;  2ZF4 A;  3WJV A;  1UA8 A;  4MXT A;  3KSN A;  3M4W A;  2V43 A;  1IWL A;  3MH9 A;  2ZPD A;  4KI3 A;  3BUU A;  4ZRA A;  3WJU A;  2V42 A;  3BK5 A;  2ZPC A;  2YZY A;  4EGD A;  4QA8 A;  1IWN A;  4Z48 A;  2W7Q A;  2BYO A;  1IWM A;  4EG9 A; 
#chains in the Genus database with same CATH homology
 3WJT A;  2P4B A;  3WJV A;  1UA8 A;  4MXT A;  3KSN A;  3M4W A;  2V43 A;  1IWL A;  4KI3 A;  2ZPD A;  3BUU A;  3WJU A;  2V42 A;  3BK5 A;  2ZPC A;  2YZY A;  1IWN A;  4Z48 A;  2W7Q A;  1IWM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3BK5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations