3C2T | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	125
structure length	125
Chain Sequence	MSSLLVKKLVESATTPMRGSEGAAGYDISSVEDVVVPAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQLILEQIVTPGVAVVLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Paramecium bursaria chlorella virus il3a
publication title	Crystallization and crystal-packing studies of Chlorella virus deoxyuridine triphosphatase. pubmed doi rcsb
molecule keywords	Deoxyuridine triphosphatase
total genus	22
structure length	125
sequence length	125
chains with identical sequence	B
ec nomenclature	ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date	2008-01-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00692	dUTPase	dUTPase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	3c2tA00

3TSLA 2PY4A 1F7QA 3TPYA 4AOZA 3KM3A 3HZAA 5F9KA 4A6AA 3ARNA 1DUTA 3EHWA 3TTAA 3H6DA 1SM8A 1SMCA 2WE2A 3ZF6A 2XCEA 4OOQA 5CCTA 3GF0A 4GK6A 2J4QA 4WRKA 3T70A 4APZ1 1DUPA 2QXXA 3TP1A 3T60A 3ZF1A 3I93A 4GV8A 2R9QA 3F4FA 5ECTA 3P48A 1SNFA 2YZJA 1MQ7A 2WE0A 2QLPA 1DUNA 1RNJA 2HRMA 1SJNA 1PKKA 2XY3A 1XS4A 2J4HA 3TS6A 2D4NA 3ZF4A 3LOJA 3ARAA 2D4MA 3HHQA 3TQ5A 2XX6A 3TQZA 3ZEZA 3TRLA 1OGHA 5CCOA 2ZDCA 2BT1A 4DHKA 3ZF2A 3H6XA 1F7OA 4AOOA 3TQ3A 1SEHA 1XS1A 2PC5A 1F7PA 4GCYA 1F7RA 1XS6A 2OL0A 1VYQA 1DUDA 2OL1A 4XJCA 3T64A 1EUWA 1RN8A 2D4LA 3MBQA 2OKDA 3TQ4A 3T6YA 3C3IA 3SO2A 1EU5A 3TPWA 3C2TA 1Q5HA 2BSYA 4B0HA 2V9XA 5EDDA 1Q5UX 2HQUA 3TPNA 1SLHA 4LHRA 4OOPA 1F7KA 2XCDA 1PKHA 3ZF0A 1F7DA 3ECYA 1DUCA 1SIXA 2BAZA 3MDXA 2WE1A 2OKBA 2WE3A 3ZF3A 2Y1TA 1SYLA 2Y8CA 2HXDA 4AO5A 1PKJA 1F7NA 2OKEA 3TPSA 3ZF5A 3CA9A 3TRNA 3LQWA 2HXBA 2HR6A
chains in the Genus database with same CATH superfamily

3TSLA 2PY4A 1F7QA 3TPYA 4AOZA 3KM3A 3HZAA 5F9KA 4A6AA 3ARNA 1DUTA 3EHWA 3TTAA 3H6DA 1SM8A 1SMCA 2WE2A 3ZF6A 2XCEA 4OOQA 5CCTA 3GF0A 4GK6A 2J4QA 4WRKA 3T70A 4APZ1 1DUPA 2QXXA 3TP1A 3T60A 3ZF1A 3I93A 4GV8A 2R9QA 3F4FA 5ECTA 3P48A 1SNFA 2YZJA 1MQ7A 2WE0A 2QLPA 1DUNA 1RNJA 2HRMA 1SJNA 1PKKA 2XY3A 1XS4A 2J4HA 3TS6A 2D4NA 3ZF4A 3LOJA 3ARAA 2D4MA 3HHQA 3TQ5A 2XX6A 3TQZA 3ZEZA 3TRLA 1OGHA 5CCOA 2ZDCA 2BT1A 4DHKA 3ZF2A 3H6XA 1F7OA 4AOOA 3TQ3A 1SEHA 1XS1A 2PC5A 1F7PA 4GCYA 1F7RA 1XS6A 2OL0A 1VYQA 1DUDA 2OL1A 4XJCA 3T64A 1EUWA 1RN8A 2D4LA 3MBQA 2OKDA 3TQ4A 1TULA 3T6YA 3C3IA 3SO2A 1EU5A 3TPWA 3C2TA 1Q5HA 2BSYA 4B0HA 2V9XA 5EDDA 1Q5UX 2HQUA 3TPNA 1SLHA 4LHRA 4OOPA 1F7KA 2XCDA 1PKHA 3ZF0A 1F7DA 3ECYA 1DUCA 1SIXA 2BAZA 3MDXA 2WE1A 2OKBA 2WE3A 3ZF3A 2Y1TA 1SYLA 2Y8CA 2HXDA 4AO5A 1PKJA 1F7NA 2OKEA 3TPSA 3ZF5A 3CA9A 3TRNA 3LQWA 2HXBA 2HR6A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3TSL A;  2PY4 A;  1F7Q A;  3TPY A;  4AOZ A;  3KM3 A;  3HZA A;  5F9K A;  4A6A A;  3ARN A;  1DUT A;  3EHW A;  3TTA A;  3H6D A;  1SM8 A;  1SMC A;  2WE2 A;  3ZF6 A;  2XCE A;  4OOQ A;  5CCT A;  3GF0 A;  4GK6 A;  2J4Q A;  4WRK A;  3T70 A;  4APZ 1;  1DUP A;  2QXX A;  3TP1 A;  3T60 A;  3ZF1 A;  3I93 A;  4GV8 A;  2R9Q A;  3F4F A;  5ECT A;  3P48 A;  1SNF A;  2YZJ A;  1MQ7 A;  2WE0 A;  2QLP A;  1DUN A;  1RNJ A;  2HRM A;  1SJN A;  1PKK A;  2XY3 A;  1XS4 A;  2J4H A;  3TS6 A;  2D4N A;  3ZF4 A;  3LOJ A;  3ARA A;  2D4M A;  3HHQ A;  3TQ5 A;  2XX6 A;  3TQZ A;  3ZEZ A;  3TRL A;  1OGH A;  5CCO A;  2ZDC A;  2BT1 A;  4DHK A;  3ZF2 A;  3H6X A;  1F7O A;  4AOO A;  3TQ3 A;  1SEH A;  1XS1 A;  2PC5 A;  1F7P A;  4GCY A;  1F7R A;  1XS6 A;  2OL0 A;  1VYQ A;  1DUD A;  2OL1 A;  4XJC A;  3T64 A;  1EUW A;  1RN8 A;  2D4L A;  3MBQ A;  2OKD A;  3TQ4 A;  3T6Y A;  3C3I A;  3SO2 A;  1EU5 A;  3TPW A;  3C2T A;  1Q5H A;  2BSY A;  4B0H A;  2V9X A;  5EDD A;  1Q5U X;  2HQU A;  3TPN A;  1SLH A;  4LHR A;  4OOP A;  1F7K A;  2XCD A;  1PKH A;  3ZF0 A;  1F7D A;  3ECY A;  1DUC A;  1SIX A;  2BAZ A;  3MDX A;  2WE1 A;  2OKB A;  2WE3 A;  3ZF3 A;  2Y1T A;  1SYL A;  2Y8C A;  2HXD A;  4AO5 A;  1PKJ A;  1F7N A;  2OKE A;  3TPS A;  3ZF5 A;  3CA9 A;  3TRN A;  3LQW A;  2HXB A;  2HR6 A; 
#chains in the Genus database with same CATH topology
 3TSL A;  2PY4 A;  1F7Q A;  3TPY A;  4AOZ A;  3KM3 A;  3HZA A;  5F9K A;  4A6A A;  3ARN A;  1DUT A;  3EHW A;  3TTA A;  3H6D A;  1SM8 A;  1SMC A;  2WE2 A;  3ZF6 A;  2XCE A;  4OOQ A;  5CCT A;  3GF0 A;  4GK6 A;  2J4Q A;  4WRK A;  3T70 A;  4APZ 1;  1DUP A;  2QXX A;  3TP1 A;  3T60 A;  3ZF1 A;  3I93 A;  4GV8 A;  2R9Q A;  3F4F A;  5ECT A;  3P48 A;  1SNF A;  2YZJ A;  1MQ7 A;  2WE0 A;  2QLP A;  1DUN A;  1RNJ A;  2HRM A;  1SJN A;  1PKK A;  2XY3 A;  1XS4 A;  2J4H A;  3TS6 A;  2D4N A;  3ZF4 A;  3LOJ A;  3ARA A;  2D4M A;  3HHQ A;  3TQ5 A;  2XX6 A;  3TQZ A;  3ZEZ A;  3TRL A;  1OGH A;  5CCO A;  2ZDC A;  2BT1 A;  4DHK A;  3ZF2 A;  3H6X A;  1F7O A;  4AOO A;  3TQ3 A;  1SEH A;  1XS1 A;  2PC5 A;  1F7P A;  4GCY A;  1F7R A;  1XS6 A;  2OL0 A;  1VYQ A;  1DUD A;  2OL1 A;  4XJC A;  3T64 A;  1EUW A;  1RN8 A;  2D4L A;  3MBQ A;  2OKD A;  3TQ4 A;  1TUL A;  3T6Y A;  3C3I A;  3SO2 A;  1EU5 A;  3TPW A;  3C2T A;  1Q5H A;  2BSY A;  4B0H A;  2V9X A;  5EDD A;  1Q5U X;  2HQU A;  3TPN A;  1SLH A;  4LHR A;  4OOP A;  1F7K A;  2XCD A;  1PKH A;  3ZF0 A;  1F7D A;  3ECY A;  1DUC A;  1SIX A;  2BAZ A;  3MDX A;  2WE1 A;  2OKB A;  2WE3 A;  3ZF3 A;  2Y1T A;  1SYL A;  2Y8C A;  2HXD A;  4AO5 A;  1PKJ A;  1F7N A;  2OKE A;  3TPS A;  3ZF5 A;  3CA9 A;  3TRN A;  3LQW A;  2HXB A;  2HR6 A; 
#chains in the Genus database with same CATH homology
 3TSL A;  2PY4 A;  1F7Q A;  3TPY A;  4AOZ A;  3KM3 A;  3HZA A;  5F9K A;  4A6A A;  3ARN A;  1DUT A;  3EHW A;  3TTA A;  3H6D A;  1SM8 A;  1SMC A;  2WE2 A;  3ZF6 A;  2XCE A;  4OOQ A;  5CCT A;  3GF0 A;  4GK6 A;  2J4Q A;  4WRK A;  3T70 A;  4APZ 1;  1DUP A;  2QXX A;  3TP1 A;  3T60 A;  3ZF1 A;  3I93 A;  4GV8 A;  2R9Q A;  3F4F A;  5ECT A;  3P48 A;  1SNF A;  2YZJ A;  1MQ7 A;  2WE0 A;  2QLP A;  1DUN A;  1RNJ A;  2HRM A;  1SJN A;  1PKK A;  2XY3 A;  1XS4 A;  2J4H A;  3TS6 A;  2D4N A;  3ZF4 A;  3LOJ A;  3ARA A;  2D4M A;  3HHQ A;  3TQ5 A;  2XX6 A;  3TQZ A;  3ZEZ A;  3TRL A;  1OGH A;  5CCO A;  2ZDC A;  2BT1 A;  4DHK A;  3ZF2 A;  3H6X A;  1F7O A;  4AOO A;  3TQ3 A;  1SEH A;  1XS1 A;  2PC5 A;  1F7P A;  4GCY A;  1F7R A;  1XS6 A;  2OL0 A;  1VYQ A;  1DUD A;  2OL1 A;  4XJC A;  3T64 A;  1EUW A;  1RN8 A;  2D4L A;  3MBQ A;  2OKD A;  3TQ4 A;  3T6Y A;  3C3I A;  3SO2 A;  1EU5 A;  3TPW A;  3C2T A;  1Q5H A;  2BSY A;  4B0H A;  2V9X A;  5EDD A;  1Q5U X;  2HQU A;  3TPN A;  1SLH A;  4LHR A;  4OOP A;  1F7K A;  2XCD A;  1PKH A;  3ZF0 A;  1F7D A;  3ECY A;  1DUC A;  1SIX A;  2BAZ A;  3MDX A;  2WE1 A;  2OKB A;  2WE3 A;  3ZF3 A;  2Y1T A;  1SYL A;  2Y8C A;  2HXD A;  4AO5 A;  1PKJ A;  1F7N A;  2OKE A;  3TPS A;  3ZF5 A;  3CA9 A;  3TRN A;  3LQW A;  2HXB A;  2HR6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3C2TA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations