3DTAH

E(l212)q, n(m44)d double mutant structure of photosynthetic reaction center from rhodobacter sphaeroides
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
240
structure length
240
Chain Sequence
DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Restoring proton transfer in L212Q mutant of photosynthetic reaction center
rcsb
molecule keywords Reaction center protein L chain
molecule tags Photosynthesis
source organism Rhodobacter sphaeroides
total genus 54
structure length 240
sequence length 240
ec nomenclature
pdb deposition date 2008-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region
H PF05239 PRC PRC-barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2 3dtaH02
4.10.540.10 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic reaction centre, H subunit, N-terminal domain 3dtaH01
4IN5H 3ZUMH 1DV3H 1K6LH 1QOVH 2HITH 2JIYH 4IN7H 1K6NH 2UXMH 1DV6H 4HBJH 2RCRH 3DTRH 2UXJH 3DUQH 3T6DH 6PRCH 1PSSH 3DTAH 2WJMH 1RZHH 1L9BH 2J8CH 1RVJH 2JBLH 1RZZH 2UWWH 4H99H 4LWYH 1KBYH 2HJ6H 2UWVH 1AIGH 3D38H 3PRCH 4HBHH 2UWSH 1R2CH 4IN6H 3DU2H 3DTSH 2UWUH 1OGVH 1PRCH 1EYSH 1JGYH 2HHKH 1F6NH 2X5UH 1AIJH 3DSYH 4TQQH 1YF6H 2UX5H 1UMXH 1VRNH 2I5NH 2GMRH 3V3YH 1FNQH 2UXLH 2HG3H 1RG5H 1E14H 1PCRH 2UXKH 1JGXH 1PSTH 1RGNH 4N7LH 2X5VH 2GNUH 4CASD 1YSTH 1RQKH 2HG9H 3WMMH 2UWTH 3T6EH 3ZUWH 2J8DH 1JGWH 1RY5H 1MPSH 1S00H 2PRCH 1JH0H 5LSEH 1JGZH 2BOZH 2BNSC 2WX5H 5PRCH 1L9JH 1DXRH 2UX4H 5LRIH 2JJ0H 4H9LH 2BNPC 2UX3H 2HH1H 1E6DH 1FNPH 1DS8H 3V3ZH 1M3XH 3DU3H 4N7KH 4RCRH 3G7FH 7PRCH 2WJNH 3I4DH
chains in the Genus database with same CATH superfamily
4IN5H 3ZUMH 1DV3H 1K6LH 1QOVH 2HITH 2JIYH 4IN7H 1K6NH 2UXMH 1DV6H 4HBJH 2RCRH 3DTRH 2UXJH 3DUQH 3T6DH 6PRCH 1PSSH 3DTAH 2WJMH 1RZHH 1L9BH 2J8CH 1RVJH 2JBLH 1RZZH 2UWWH 4H99H 4LWYH 1KBYH 2HJ6H 2UWVH 1AIGH 3D38H 3PRCH 4HBHH 2UWSH 1R2CH 4IN6H 3DU2H 3DTSH 2UWUH 1OGVH 1PRCH 1EYSH 1JGYH 2HHKH 1F6NH 2X5UH 1AIJH 3DSYH 4TQQH 1YF6H 2UX5H 1UMXH 1VRNH 2I5NH 2GMRH 3V3YH 1FNQH 2UXLH 2HG3H 1RG5H 1E14H 1PCRH 2UXKH 1JGXH 1PSTH 1RGNH 4N7LH 2X5VH 2GNUH 4CASD 1YSTH 1RQKH 2HG9H 3WMMH 2UWTH 3T6EH 3ZUWH 2J8DH 1JGWH 1RY5H 1MPSH 1S00H 2PRCH 1JH0H 5LSEH 1JGZH 2BOZH 2BNSC 2WX5H 5PRCH 1L9JH 1DXRH 2UX4H 5LRIH 2JJ0H 4H9LH 2BNPC 2UX3H 2HH1H 1E6DH 1FNPH 1DS8H 3V3ZH 1M3XH 3DU3H 4N7KH 4RCRH 3G7FH 7PRCH 2WJNH 3I4DH
chains in the Genus database with same CATH topology
4IN5H 3ZUMH 1DV3H 1K6LH 1QOVH 2HITH 2JIYH 4IN7H 1K6NH 2UXMH 1DV6H 4HBJH 2RCRH 3DTRH 2UXJH 3DUQH 3T6DH 6PRCH 1PSSH 3DTAH 2WJMH 1RZHH 1L9BH 2J8CH 1RVJH 2JBLH 1RZZH 2UWWH 4H99H 4LWYH 1KBYH 2HJ6H 2UWVH 1AIGH 3D38H 3PRCH 4HBHH 2UWSH 1R2CH 4IN6H 3DU2H 3DTSH 2UWUH 1OGVH 1PRCH 1EYSH 1JGYH 2HHKH 1F6NH 2X5UH 1AIJH 3DSYH 4TQQH 1YF6H 2UX5H 1UMXH 1VRNH 2I5NH 2GMRH 3V3YH 1FNQH 2UXLH 2HG3H 1RG5H 1E14H 1PCRH 2UXKH 1JGXH 1PSTH 1RGNH 4N7LH 2X5VH 2GNUH 4CASD 1YSTH 1RQKH 2HG9H 3WMMH 2UWTH 3T6EH 3ZUWH 2J8DH 1JGWH 1RY5H 1MPSH 1S00H 2PRCH 1JH0H 5LSEH 1JGZH 2BOZH 2BNSC 2WX5H 5PRCH 1L9JH 1DXRH 2UX4H 5LRIH 2JJ0H 4H9LH 2BNPC 2UX3H 2HH1H 1E6DH 1FNPH 1DS8H 3V3ZH 1M3XH 3DU3H 4N7KH 4RCRH 3G7FH 7PRCH 2WJNH 3I4DH
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4IN5 H;  3ZUM H;  1DV3 H;  1K6L H;  1QOV H;  2HIT H;  2JIY H;  4IN7 H;  1K6N H;  2UXM H;  1DV6 H;  4HBJ H;  2RCR H;  3DTR H;  2UXJ H;  3DUQ H;  3T6D H;  6PRC H;  1PSS H;  3DTA H;  2WJM H;  1RZH H;  1L9B H;  2J8C H;  1RVJ H;  2JBL H;  1RZZ H;  2UWW H;  4H99 H;  4LWY H;  1KBY H;  2HJ6 H;  2UWV H;  1AIG H;  3D38 H;  3PRC H;  4HBH H;  2UWS H;  1R2C H;  4IN6 H;  3DU2 H;  3DTS H;  2UWU H;  1OGV H;  1PRC H;  1EYS H;  1JGY H;  2HHK H;  1F6N H;  2X5U H;  1AIJ H;  3DSY H;  4TQQ H;  1YF6 H;  2UX5 H;  1UMX H;  1VRN H;  2I5N H;  2GMR H;  3V3Y H;  1FNQ H;  2UXL H;  2HG3 H;  1RG5 H;  1E14 H;  1PCR H;  2UXK H;  1JGX H;  1PST H;  1RGN H;  4N7L H;  2X5V H;  2GNU H;  4CAS D;  1YST H;  1RQK H;  2HG9 H;  3WMM H;  2UWT H;  3T6E H;  3ZUW H;  2J8D H;  1JGW H;  1RY5 H;  1MPS H;  1S00 H;  2PRC H;  1JH0 H;  5LSE H;  1JGZ H;  2BOZ H;  2BNS C;  2WX5 H;  5PRC H;  1L9J H;  1DXR H;  2UX4 H;  5LRI H;  2JJ0 H;  4H9L H;  2BNP C;  2UX3 H;  2HH1 H;  1E6D H;  1FNP H;  1DS8 H;  3V3Z H;  1M3X H;  3DU3 H;  4N7K H;  4RCR H;  3G7F H;  7PRC H;  2WJN H;  3I4D H; 
#chains in the Genus database with same CATH topology
 4IN5 H;  3ZUM H;  1DV3 H;  1K6L H;  1QOV H;  2HIT H;  2JIY H;  4IN7 H;  1K6N H;  2UXM H;  1DV6 H;  4HBJ H;  2RCR H;  3DTR H;  2UXJ H;  3DUQ H;  3T6D H;  6PRC H;  1PSS H;  3DTA H;  2WJM H;  1RZH H;  1L9B H;  2J8C H;  1RVJ H;  2JBL H;  1RZZ H;  2UWW H;  4H99 H;  4LWY H;  1KBY H;  2HJ6 H;  2UWV H;  1AIG H;  3D38 H;  3PRC H;  4HBH H;  2UWS H;  1R2C H;  4IN6 H;  3DU2 H;  3DTS H;  2UWU H;  1OGV H;  1PRC H;  1EYS H;  1JGY H;  2HHK H;  1F6N H;  2X5U H;  1AIJ H;  3DSY H;  4TQQ H;  1YF6 H;  2UX5 H;  1UMX H;  1VRN H;  2I5N H;  2GMR H;  3V3Y H;  1FNQ H;  2UXL H;  2HG3 H;  1RG5 H;  1E14 H;  1PCR H;  2UXK H;  1JGX H;  1PST H;  1RGN H;  4N7L H;  2X5V H;  2GNU H;  4CAS D;  1YST H;  1RQK H;  2HG9 H;  3WMM H;  2UWT H;  3T6E H;  3ZUW H;  2J8D H;  1JGW H;  1RY5 H;  1MPS H;  1S00 H;  2PRC H;  1JH0 H;  5LSE H;  1JGZ H;  2BOZ H;  2BNS C;  2WX5 H;  5PRC H;  1L9J H;  1DXR H;  2UX4 H;  5LRI H;  2JJ0 H;  4H9L H;  2BNP C;  2UX3 H;  2HH1 H;  1E6D H;  1FNP H;  1DS8 H;  3V3Z H;  1M3X H;  3DU3 H;  4N7K H;  4RCR H;  3G7F H;  7PRC H;  2WJN H;  3I4D H; 
#chains in the Genus database with same CATH homology
 4IN5 H;  3ZUM H;  1DV3 H;  1K6L H;  1QOV H;  2HIT H;  2JIY H;  4IN7 H;  1K6N H;  2UXM H;  1DV6 H;  4HBJ H;  2RCR H;  3DTR H;  2UXJ H;  3DUQ H;  3T6D H;  6PRC H;  1PSS H;  3DTA H;  2WJM H;  1RZH H;  1L9B H;  2J8C H;  1RVJ H;  2JBL H;  1RZZ H;  2UWW H;  4H99 H;  4LWY H;  1KBY H;  2HJ6 H;  2UWV H;  1AIG H;  3D38 H;  3PRC H;  4HBH H;  2UWS H;  1R2C H;  4IN6 H;  3DU2 H;  3DTS H;  2UWU H;  1OGV H;  1PRC H;  1EYS H;  1JGY H;  2HHK H;  1F6N H;  2X5U H;  1AIJ H;  3DSY H;  4TQQ H;  1YF6 H;  2UX5 H;  1UMX H;  1VRN H;  2I5N H;  2GMR H;  3V3Y H;  1FNQ H;  2UXL H;  2HG3 H;  1RG5 H;  1E14 H;  1PCR H;  2UXK H;  1JGX H;  1PST H;  1RGN H;  4N7L H;  2X5V H;  2GNU H;  4CAS D;  1YST H;  1RQK H;  2HG9 H;  3WMM H;  2UWT H;  3T6E H;  3ZUW H;  2J8D H;  1JGW H;  1RY5 H;  1MPS H;  1S00 H;  2PRC H;  1JH0 H;  5LSE H;  1JGZ H;  2BOZ H;  2BNS C;  2WX5 H;  5PRC H;  1L9J H;  1DXR H;  2UX4 H;  5LRI H;  2JJ0 H;  4H9L H;  2BNP C;  2UX3 H;  2HH1 H;  1E6D H;  1FNP H;  1DS8 H;  3V3Z H;  1M3X H;  3DU3 H;  4N7K H;  4RCR H;  3G7F H;  7PRC H;  2WJN H;  3I4D H;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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