3DUQH

E(l212)a, d(l213)a, n(m5)d triple mutant structure of photosynthetic reaction center from rhodobacter sphaeroides
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
240
structure length
240
Chain Sequence
DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structural description of compensatory mutations that restore proton transfer pathways to the L212A-L213A mutant bacterial reaction center
rcsb
molecule keywords Reaction center protein L chain
molecule tags Photosynthesis
source organism Rhodobacter sphaeroides
total genus 56
structure length 240
sequence length 240
ec nomenclature
pdb deposition date 2008-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region
H PF05239 PRC PRC-barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2 3duqH02
4.10.540.10 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic reaction centre, H subunit, N-terminal domain 3duqH01
1FNQH 1L9BH 2UX5H 4IN7H 2J8DH 1FNPH 1QOVH 2GMRH 2HG9H 2HHKH 2UWVH 1AIGH 3DTAH 2UX4H 1DV3H 1K6LH 3V3ZH 1PCRH 1K6NH 3DUQH 1RQKH 1JH0H 2UXJH 1OGVH 2RCRH 3I4DH 4IN6H 2UWWH 4TQQH 1E14H 4H99H 1DV6H 2UX3H 3V3YH 2BOZH 2J8CH 1YF6H 1MPSH 1JGWH 1JGYH 3ZUWH 1RZZH 2HJ6H 1RY5H 1EYSH 2UWTH 2UXKH 1R2CH 1DS8H 4CASD 2JIYH 1AIJH 1KBYH 6PRCH 2UWUH 4LWYH 3G7FH 4N7KH 2X5UH 3T6DH 7PRCH 1YSTH 2BNSC 1JGXH 5LSEH 5PRCH 1RGNH 3DSYH 2HH1H 2UXMH 1PSSH 1M3XH 1RZHH 3DTRH 3ZUMH 3DU3H 2WJNH 1RG5H 4HBHH 1PRCH 1DXRH 2HG3H 2I5NH 4H9LH 1E6DH 1JGZH 4HBJH 2X5VH 2PRCH 2JBLH 3PRCH 5LRIH 1F6NH 1VRNH 3DU2H 4IN5H 4N7LH 2WJMH 3WMMH 4RCRH 1L9JH 2BNPC 3DTSH 2UWSH 1S00H 2GNUH 2JJ0H 2HITH 2UXLH 1RVJH 2WX5H 1PSTH 1UMXH 3T6EH 3D38H
chains in the Genus database with same CATH superfamily
1FNQH 1L9BH 2UX5H 4IN7H 2J8DH 1FNPH 1QOVH 2GMRH 2HG9H 2HHKH 2UWVH 1AIGH 3DTAH 2UX4H 1DV3H 1K6LH 3V3ZH 1PCRH 1K6NH 3DUQH 1RQKH 1JH0H 2UXJH 1OGVH 2RCRH 3I4DH 4IN6H 2UWWH 4TQQH 1E14H 4H99H 1DV6H 2UX3H 3V3YH 2BOZH 2J8CH 1YF6H 1MPSH 1JGWH 1JGYH 3ZUWH 1RZZH 2HJ6H 1RY5H 1EYSH 2UWTH 2UXKH 1R2CH 1DS8H 4CASD 2JIYH 1AIJH 1KBYH 6PRCH 2UWUH 4LWYH 3G7FH 4N7KH 2X5UH 3T6DH 7PRCH 1YSTH 2BNSC 1JGXH 5LSEH 5PRCH 1RGNH 3DSYH 2HH1H 2UXMH 1PSSH 1M3XH 1RZHH 3DTRH 3ZUMH 3DU3H 2WJNH 1RG5H 4HBHH 1PRCH 1DXRH 2HG3H 2I5NH 4H9LH 1E6DH 1JGZH 4HBJH 2X5VH 2PRCH 2JBLH 3PRCH 5LRIH 1F6NH 1VRNH 3DU2H 4IN5H 4N7LH 2WJMH 3WMMH 4RCRH 1L9JH 2BNPC 3DTSH 2UWSH 1S00H 2GNUH 2JJ0H 2HITH 2UXLH 1RVJH 2WX5H 1PSTH 1UMXH 3T6EH 3D38H
chains in the Genus database with same CATH topology
1FNQH 1L9BH 2UX5H 4IN7H 2J8DH 1FNPH 1QOVH 2GMRH 2HG9H 2HHKH 2UWVH 1AIGH 3DTAH 2UX4H 1DV3H 1K6LH 3V3ZH 1PCRH 1K6NH 3DUQH 1RQKH 1JH0H 2UXJH 1OGVH 2RCRH 3I4DH 4IN6H 2UWWH 4TQQH 1E14H 4H99H 1DV6H 2UX3H 3V3YH 2BOZH 2J8CH 1YF6H 1MPSH 1JGWH 1JGYH 3ZUWH 1RZZH 2HJ6H 1RY5H 1EYSH 2UWTH 2UXKH 1R2CH 1DS8H 4CASD 2JIYH 1AIJH 1KBYH 6PRCH 2UWUH 4LWYH 3G7FH 4N7KH 2X5UH 3T6DH 7PRCH 1YSTH 2BNSC 1JGXH 5LSEH 5PRCH 1RGNH 3DSYH 2HH1H 2UXMH 1PSSH 1M3XH 1RZHH 3DTRH 3ZUMH 3DU3H 2WJNH 1RG5H 4HBHH 1PRCH 1DXRH 2HG3H 2I5NH 4H9LH 1E6DH 1JGZH 4HBJH 2X5VH 2PRCH 2JBLH 3PRCH 5LRIH 1F6NH 1VRNH 3DU2H 4IN5H 4N7LH 2WJMH 3WMMH 4RCRH 1L9JH 2BNPC 3DTSH 2UWSH 1S00H 2GNUH 2JJ0H 2HITH 2UXLH 1RVJH 2WX5H 1PSTH 1UMXH 3T6EH 3D38H
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1FNQ H;  1L9B H;  2UX5 H;  4IN7 H;  2J8D H;  1FNP H;  1QOV H;  2GMR H;  2HG9 H;  2HHK H;  2UWV H;  1AIG H;  3DTA H;  2UX4 H;  1DV3 H;  1K6L H;  3V3Z H;  1PCR H;  1K6N H;  3DUQ H;  1RQK H;  1JH0 H;  2UXJ H;  1OGV H;  2RCR H;  3I4D H;  4IN6 H;  2UWW H;  4TQQ H;  1E14 H;  4H99 H;  1DV6 H;  2UX3 H;  3V3Y H;  2BOZ H;  2J8C H;  1YF6 H;  1MPS H;  1JGW H;  1JGY H;  3ZUW H;  1RZZ H;  2HJ6 H;  1RY5 H;  1EYS H;  2UWT H;  2UXK H;  1R2C H;  1DS8 H;  4CAS D;  2JIY H;  1AIJ H;  1KBY H;  6PRC H;  2UWU H;  4LWY H;  3G7F H;  4N7K H;  2X5U H;  3T6D H;  7PRC H;  1YST H;  2BNS C;  1JGX H;  5LSE H;  5PRC H;  1RGN H;  3DSY H;  2HH1 H;  2UXM H;  1PSS H;  1M3X H;  1RZH H;  3DTR H;  3ZUM H;  3DU3 H;  2WJN H;  1RG5 H;  4HBH H;  1PRC H;  1DXR H;  2HG3 H;  2I5N H;  4H9L H;  1E6D H;  1JGZ H;  4HBJ H;  2X5V H;  2PRC H;  2JBL H;  3PRC H;  5LRI H;  1F6N H;  1VRN H;  3DU2 H;  4IN5 H;  4N7L H;  2WJM H;  3WMM H;  4RCR H;  1L9J H;  2BNP C;  3DTS H;  2UWS H;  1S00 H;  2GNU H;  2JJ0 H;  2HIT H;  2UXL H;  1RVJ H;  2WX5 H;  1PST H;  1UMX H;  3T6E H;  3D38 H; 
#chains in the Genus database with same CATH topology
 1FNQ H;  1L9B H;  2UX5 H;  4IN7 H;  2J8D H;  1FNP H;  1QOV H;  2GMR H;  2HG9 H;  2HHK H;  2UWV H;  1AIG H;  3DTA H;  2UX4 H;  1DV3 H;  1K6L H;  3V3Z H;  1PCR H;  1K6N H;  3DUQ H;  1RQK H;  1JH0 H;  2UXJ H;  1OGV H;  2RCR H;  3I4D H;  4IN6 H;  2UWW H;  4TQQ H;  1E14 H;  4H99 H;  1DV6 H;  2UX3 H;  3V3Y H;  2BOZ H;  2J8C H;  1YF6 H;  1MPS H;  1JGW H;  1JGY H;  3ZUW H;  1RZZ H;  2HJ6 H;  1RY5 H;  1EYS H;  2UWT H;  2UXK H;  1R2C H;  1DS8 H;  4CAS D;  2JIY H;  1AIJ H;  1KBY H;  6PRC H;  2UWU H;  4LWY H;  3G7F H;  4N7K H;  2X5U H;  3T6D H;  7PRC H;  1YST H;  2BNS C;  1JGX H;  5LSE H;  5PRC H;  1RGN H;  3DSY H;  2HH1 H;  2UXM H;  1PSS H;  1M3X H;  1RZH H;  3DTR H;  3ZUM H;  3DU3 H;  2WJN H;  1RG5 H;  4HBH H;  1PRC H;  1DXR H;  2HG3 H;  2I5N H;  4H9L H;  1E6D H;  1JGZ H;  4HBJ H;  2X5V H;  2PRC H;  2JBL H;  3PRC H;  5LRI H;  1F6N H;  1VRN H;  3DU2 H;  4IN5 H;  4N7L H;  2WJM H;  3WMM H;  4RCR H;  1L9J H;  2BNP C;  3DTS H;  2UWS H;  1S00 H;  2GNU H;  2JJ0 H;  2HIT H;  2UXL H;  1RVJ H;  2WX5 H;  1PST H;  1UMX H;  3T6E H;  3D38 H; 
#chains in the Genus database with same CATH homology
 1FNQ H;  1L9B H;  2UX5 H;  4IN7 H;  2J8D H;  1FNP H;  1QOV H;  2GMR H;  2HG9 H;  2HHK H;  2UWV H;  1AIG H;  3DTA H;  2UX4 H;  1DV3 H;  1K6L H;  3V3Z H;  1PCR H;  1K6N H;  3DUQ H;  1RQK H;  1JH0 H;  2UXJ H;  1OGV H;  2RCR H;  3I4D H;  4IN6 H;  2UWW H;  4TQQ H;  1E14 H;  4H99 H;  1DV6 H;  2UX3 H;  3V3Y H;  2BOZ H;  2J8C H;  1YF6 H;  1MPS H;  1JGW H;  1JGY H;  3ZUW H;  1RZZ H;  2HJ6 H;  1RY5 H;  1EYS H;  2UWT H;  2UXK H;  1R2C H;  1DS8 H;  4CAS D;  2JIY H;  1AIJ H;  1KBY H;  6PRC H;  2UWU H;  4LWY H;  3G7F H;  4N7K H;  2X5U H;  3T6D H;  7PRC H;  1YST H;  2BNS C;  1JGX H;  5LSE H;  5PRC H;  1RGN H;  3DSY H;  2HH1 H;  2UXM H;  1PSS H;  1M3X H;  1RZH H;  3DTR H;  3ZUM H;  3DU3 H;  2WJN H;  1RG5 H;  4HBH H;  1PRC H;  1DXR H;  2HG3 H;  2I5N H;  4H9L H;  1E6D H;  1JGZ H;  4HBJ H;  2X5V H;  2PRC H;  2JBL H;  3PRC H;  5LRI H;  1F6N H;  1VRN H;  3DU2 H;  4IN5 H;  4N7L H;  2WJM H;  3WMM H;  4RCR H;  1L9J H;  2BNP C;  3DTS H;  2UWS H;  1S00 H;  2GNU H;  2JJ0 H;  2HIT H;  2UXL H;  1RVJ H;  2WX5 H;  1PST H;  1UMX H;  3T6E H;  3D38 H;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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