3ECYA

Crystal structural analysis of drosophila melanogaster dutpase
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
126
structure length
119
Chain Sequence
TCVLRFAKLTENALEPVRGSAKAAGVDLRSAYDVVVPARGKAIVKTDLQVQVPEGSYGRVAPRFIDVGAGVVDEDYRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular shape and prominent role of beta-strand swapping in organization of dUTPase oligomers.
pubmed doi rcsb
molecule tags Hydrolase
source organism Drosophila melanogaster
molecule keywords CG4584-PA, isoform A (BcDNA.LD08534)
total genus 20
structure length 119
sequence length 126
chains with identical sequence B
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2008-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 3ecyA00
1DUDA 2OKBA 3H6XA 3SO2A 3TSLA 3ZF1A 1SNFA 1F7RA 2YZJA 1XS6A 1SEHA 3TQ5A 3ARAA 3KM3A 2XCDA 1RN8A 4OOPA 3ZF2A 3P48A 1SMCA 4AOZA 2QLPA 3MBQA 2XX6A 2D4MA 1PKKA 3LQWA 5F9KA 2J4HA 1OGHA 3T64A 2J4QA 1F7KA 2HXBA 2D4NA 3ZF6A 4APZ1 3TRNA 3C2TA 5EDDA 3TPNA 3TRLA 1DUNA 3HHQA 3TTAA 3EHWA 3T6YA 2PY4A 2HXDA 2V9XA 3ZF4A 3H6DA 2XCEA 3I93A 3TQZA 3TQ4A 5CCOA 1PKHA 3ECYA 1EUWA 1F7NA 3C3IA 2WE2A 3ZF3A 3F4FA 3TPSA 1SIXA 1XS1A 2BSYA 1Q5UX 3ARNA 3TPYA 2WE3A 2OKDA 2QXXA 2PC5A 2WE0A 1SM8A 3MDXA 5CCTA 4AOOA 4GV8A 4GCYA 4DHKA 1DUPA 4WRKA 2Y8CA 4GK6A 3ZF0A 3HZAA 1RNJA 2OKEA 3LOJA 1PKJA 2Y1TA 4OOQA 5ECTA 3TPWA 4B0HA 1EU5A 2BAZA 1DUCA 2OL1A 1DUTA 3TP1A 2HR6A 3CA9A 2OL0A 2XY3A 3TQ3A 2D4LA 1Q5HA 2R9QA 3T60A 3ZF5A 3T70A 1SLHA 3ZEZA 2WE1A 1F7PA 1F7DA 1F7QA 4A6AA 3TS6A 1F7OA 4XJCA 1MQ7A 3GF0A 2ZDCA 4LHRA 1XS4A 4AO5A 2HRMA 1VYQA 1SJNA 2HQUA 1SYLA 2BT1A
chains in the Genus database with same CATH superfamily
1DUDA 2OKBA 3H6XA 3SO2A 3TSLA 3ZF1A 1SNFA 1F7RA 2YZJA 1XS6A 1SEHA 3TQ5A 3ARAA 3KM3A 2XCDA 1RN8A 4OOPA 3ZF2A 3P48A 1SMCA 4AOZA 2QLPA 3MBQA 2XX6A 2D4MA 1PKKA 3LQWA 5F9KA 2J4HA 1OGHA 3T64A 2J4QA 1F7KA 2HXBA 2D4NA 3ZF6A 4APZ1 3TRNA 3C2TA 5EDDA 3TPNA 3TRLA 1DUNA 3HHQA 3TTAA 3EHWA 3T6YA 2PY4A 2HXDA 2V9XA 3ZF4A 3H6DA 2XCEA 3I93A 3TQZA 3TQ4A 5CCOA 1PKHA 3ECYA 1EUWA 1F7NA 3C3IA 2WE2A 1TULA 3ZF3A 3F4FA 3TPSA 1SIXA 1XS1A 2BSYA 1Q5UX 3ARNA 3TPYA 2WE3A 2OKDA 2QXXA 2PC5A 2WE0A 1SM8A 3MDXA 5CCTA 4AOOA 4GV8A 4GCYA 4DHKA 1DUPA 4WRKA 2Y8CA 4GK6A 3ZF0A 3HZAA 1RNJA 2OKEA 3LOJA 1PKJA 2Y1TA 4OOQA 5ECTA 3TPWA 4B0HA 1EU5A 2BAZA 1DUCA 2OL1A 1DUTA 3TP1A 2HR6A 3CA9A 2OL0A 2XY3A 3TQ3A 2D4LA 1Q5HA 2R9QA 3T60A 3ZF5A 3T70A 1SLHA 3ZEZA 2WE1A 1F7PA 1F7DA 1F7QA 4A6AA 3TS6A 1F7OA 4XJCA 1MQ7A 3GF0A 2ZDCA 4LHRA 1XS4A 4AO5A 2HRMA 1VYQA 1SJNA 2HQUA 1SYLA 2BT1A
chains in the Genus database with same CATH topology
1DUDA 2OKBA 3H6XA 3SO2A 3TSLA 3ZF1A 1SNFA 1F7RA 2YZJA 1XS6A 1SEHA 3TQ5A 3ARAA 3KM3A 2XCDA 1RN8A 4OOPA 3ZF2A 3P48A 1SMCA 4AOZA 2QLPA 3MBQA 2XX6A 2D4MA 1PKKA 3LQWA 5F9KA 2J4HA 1OGHA 3T64A 2J4QA 1F7KA 2HXBA 2D4NA 3ZF6A 4APZ1 3TRNA 3C2TA 5EDDA 3TPNA 3TRLA 1DUNA 3HHQA 3TTAA 3EHWA 3T6YA 2PY4A 2HXDA 2V9XA 3ZF4A 3H6DA 2XCEA 3I93A 3TQZA 3TQ4A 5CCOA 1PKHA 3ECYA 1EUWA 1F7NA 3C3IA 2WE2A 3ZF3A 3F4FA 3TPSA 1SIXA 1XS1A 2BSYA 1Q5UX 3ARNA 3TPYA 2WE3A 2OKDA 2QXXA 2PC5A 2WE0A 1SM8A 3MDXA 5CCTA 4AOOA 4GV8A 4GCYA 4DHKA 1DUPA 4WRKA 2Y8CA 4GK6A 3ZF0A 3HZAA 1RNJA 2OKEA 3LOJA 1PKJA 2Y1TA 4OOQA 5ECTA 3TPWA 4B0HA 1EU5A 2BAZA 1DUCA 2OL1A 1DUTA 3TP1A 2HR6A 3CA9A 2OL0A 2XY3A 3TQ3A 2D4LA 1Q5HA 2R9QA 3T60A 3ZF5A 3T70A 1SLHA 3ZEZA 2WE1A 1F7PA 1F7DA 1F7QA 4A6AA 3TS6A 1F7OA 4XJCA 1MQ7A 3GF0A 2ZDCA 4LHRA 1XS4A 4AO5A 2HRMA 1VYQA 1SJNA 2HQUA 1SYLA 2BT1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DUD A;  2OKB A;  3H6X A;  3SO2 A;  3TSL A;  3ZF1 A;  1SNF A;  1F7R A;  2YZJ A;  1XS6 A;  1SEH A;  3TQ5 A;  3ARA A;  3KM3 A;  2XCD A;  1RN8 A;  4OOP A;  3ZF2 A;  3P48 A;  1SMC A;  4AOZ A;  2QLP A;  3MBQ A;  2XX6 A;  2D4M A;  1PKK A;  3LQW A;  5F9K A;  2J4H A;  1OGH A;  3T64 A;  2J4Q A;  1F7K A;  2HXB A;  2D4N A;  3ZF6 A;  4APZ 1;  3TRN A;  3C2T A;  5EDD A;  3TPN A;  3TRL A;  1DUN A;  3HHQ A;  3TTA A;  3EHW A;  3T6Y A;  2PY4 A;  2HXD A;  2V9X A;  3ZF4 A;  3H6D A;  2XCE A;  3I93 A;  3TQZ A;  3TQ4 A;  5CCO A;  1PKH A;  3ECY A;  1EUW A;  1F7N A;  3C3I A;  2WE2 A;  3ZF3 A;  3F4F A;  3TPS A;  1SIX A;  1XS1 A;  2BSY A;  1Q5U X;  3ARN A;  3TPY A;  2WE3 A;  2OKD A;  2QXX A;  2PC5 A;  2WE0 A;  1SM8 A;  3MDX A;  5CCT A;  4AOO A;  4GV8 A;  4GCY A;  4DHK A;  1DUP A;  4WRK A;  2Y8C A;  4GK6 A;  3ZF0 A;  3HZA A;  1RNJ A;  2OKE A;  3LOJ A;  1PKJ A;  2Y1T A;  4OOQ A;  5ECT A;  3TPW A;  4B0H A;  1EU5 A;  2BAZ A;  1DUC A;  2OL1 A;  1DUT A;  3TP1 A;  2HR6 A;  3CA9 A;  2OL0 A;  2XY3 A;  3TQ3 A;  2D4L A;  1Q5H A;  2R9Q A;  3T60 A;  3ZF5 A;  3T70 A;  1SLH A;  3ZEZ A;  2WE1 A;  1F7P A;  1F7D A;  1F7Q A;  4A6A A;  3TS6 A;  1F7O A;  4XJC A;  1MQ7 A;  3GF0 A;  2ZDC A;  4LHR A;  1XS4 A;  4AO5 A;  2HRM A;  1VYQ A;  1SJN A;  2HQU A;  1SYL A;  2BT1 A; 
#chains in the Genus database with same CATH topology
 1DUD A;  2OKB A;  3H6X A;  3SO2 A;  3TSL A;  3ZF1 A;  1SNF A;  1F7R A;  2YZJ A;  1XS6 A;  1SEH A;  3TQ5 A;  3ARA A;  3KM3 A;  2XCD A;  1RN8 A;  4OOP A;  3ZF2 A;  3P48 A;  1SMC A;  4AOZ A;  2QLP A;  3MBQ A;  2XX6 A;  2D4M A;  1PKK A;  3LQW A;  5F9K A;  2J4H A;  1OGH A;  3T64 A;  2J4Q A;  1F7K A;  2HXB A;  2D4N A;  3ZF6 A;  4APZ 1;  3TRN A;  3C2T A;  5EDD A;  3TPN A;  3TRL A;  1DUN A;  3HHQ A;  3TTA A;  3EHW A;  3T6Y A;  2PY4 A;  2HXD A;  2V9X A;  3ZF4 A;  3H6D A;  2XCE A;  3I93 A;  3TQZ A;  3TQ4 A;  5CCO A;  1PKH A;  3ECY A;  1EUW A;  1F7N A;  3C3I A;  2WE2 A;  1TUL A;  3ZF3 A;  3F4F A;  3TPS A;  1SIX A;  1XS1 A;  2BSY A;  1Q5U X;  3ARN A;  3TPY A;  2WE3 A;  2OKD A;  2QXX A;  2PC5 A;  2WE0 A;  1SM8 A;  3MDX A;  5CCT A;  4AOO A;  4GV8 A;  4GCY A;  4DHK A;  1DUP A;  4WRK A;  2Y8C A;  4GK6 A;  3ZF0 A;  3HZA A;  1RNJ A;  2OKE A;  3LOJ A;  1PKJ A;  2Y1T A;  4OOQ A;  5ECT A;  3TPW A;  4B0H A;  1EU5 A;  2BAZ A;  1DUC A;  2OL1 A;  1DUT A;  3TP1 A;  2HR6 A;  3CA9 A;  2OL0 A;  2XY3 A;  3TQ3 A;  2D4L A;  1Q5H A;  2R9Q A;  3T60 A;  3ZF5 A;  3T70 A;  1SLH A;  3ZEZ A;  2WE1 A;  1F7P A;  1F7D A;  1F7Q A;  4A6A A;  3TS6 A;  1F7O A;  4XJC A;  1MQ7 A;  3GF0 A;  2ZDC A;  4LHR A;  1XS4 A;  4AO5 A;  2HRM A;  1VYQ A;  1SJN A;  2HQU A;  1SYL A;  2BT1 A; 
#chains in the Genus database with same CATH homology
 1DUD A;  2OKB A;  3H6X A;  3SO2 A;  3TSL A;  3ZF1 A;  1SNF A;  1F7R A;  2YZJ A;  1XS6 A;  1SEH A;  3TQ5 A;  3ARA A;  3KM3 A;  2XCD A;  1RN8 A;  4OOP A;  3ZF2 A;  3P48 A;  1SMC A;  4AOZ A;  2QLP A;  3MBQ A;  2XX6 A;  2D4M A;  1PKK A;  3LQW A;  5F9K A;  2J4H A;  1OGH A;  3T64 A;  2J4Q A;  1F7K A;  2HXB A;  2D4N A;  3ZF6 A;  4APZ 1;  3TRN A;  3C2T A;  5EDD A;  3TPN A;  3TRL A;  1DUN A;  3HHQ A;  3TTA A;  3EHW A;  3T6Y A;  2PY4 A;  2HXD A;  2V9X A;  3ZF4 A;  3H6D A;  2XCE A;  3I93 A;  3TQZ A;  3TQ4 A;  5CCO A;  1PKH A;  3ECY A;  1EUW A;  1F7N A;  3C3I A;  2WE2 A;  3ZF3 A;  3F4F A;  3TPS A;  1SIX A;  1XS1 A;  2BSY A;  1Q5U X;  3ARN A;  3TPY A;  2WE3 A;  2OKD A;  2QXX A;  2PC5 A;  2WE0 A;  1SM8 A;  3MDX A;  5CCT A;  4AOO A;  4GV8 A;  4GCY A;  4DHK A;  1DUP A;  4WRK A;  2Y8C A;  4GK6 A;  3ZF0 A;  3HZA A;  1RNJ A;  2OKE A;  3LOJ A;  1PKJ A;  2Y1T A;  4OOQ A;  5ECT A;  3TPW A;  4B0H A;  1EU5 A;  2BAZ A;  1DUC A;  2OL1 A;  1DUT A;  3TP1 A;  2HR6 A;  3CA9 A;  2OL0 A;  2XY3 A;  3TQ3 A;  2D4L A;  1Q5H A;  2R9Q A;  3T60 A;  3ZF5 A;  3T70 A;  1SLH A;  3ZEZ A;  2WE1 A;  1F7P A;  1F7D A;  1F7Q A;  4A6A A;  3TS6 A;  1F7O A;  4XJC A;  1MQ7 A;  3GF0 A;  2ZDC A;  4LHR A;  1XS4 A;  4AO5 A;  2HRM A;  1VYQ A;  1SJN A;  2HQU A;  1SYL A;  2BT1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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