3GE8 | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	102
structure length	102
Chain Sequence	STLADQALHNNNVGPIIRAGDLVEPVIETAEIDNPGKEITVEDRRAYVRIAAEGELILTRKTLEEQLGRPFNMQELEINLASFAGQIQADEDQIRFYFDKTM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 102 atoms

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102 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Pseudomonas mendocina
publication title	Role for threonine 201 in the catalytic cycle of the soluble diiron hydroxylase toluene 4-monooxygenase. pubmed doi rcsb
molecule keywords	Toluene-4-monooxygenase system protein A
total genus	27
structure length	102
sequence length	102
chains with identical sequence	H
ec nomenclature
pdb deposition date	2009-02-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
E	PF02406	MmoB_DmpM	MmoB/DmpM family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.56.10	Alpha Beta	Alpha-Beta Complex	Phenol Hydroxylase P2 Protein	Monooxygenase component MmoB/DmpM	3ge8E00

4GAMD 3Q3OE 3Q2AE 2MOBA 1HQIA 2BF3A 1CKVA 2BF2A 3Q3ME 2BF5A 3RI7E 3GE3E 3Q14E 3Q3NE 2INNL 3I63E 3GE8E 3DHHE 1G10A 2BF3B 1G11A 2INPL 3I5JE 3DHIE
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4GAM D;  3Q3O E;  3Q2A E;  2MOB A;  1HQI A;  2BF3 A;  1CKV A;  2BF2 A;  3Q3M E;  2BF5 A;  3RI7 E;  3GE3 E;  3Q14 E;  3Q3N E;  2INN L;  3I63 E;  3GE8 E;  3DHH E;  1G10 A;  2BF3 B;  1G11 A;  2INP L;  3I5J E;  3DHI E; 
#chains in the Genus database with same CATH topology
 4GAM D;  3Q3O E;  3Q2A E;  2MOB A;  1HQI A;  2BF3 A;  1CKV A;  2BF2 A;  3Q3M E;  2BF5 A;  3RI7 E;  3GE3 E;  3Q14 E;  3Q3N E;  2INN L;  3I63 E;  3GE8 E;  3DHH E;  1G10 A;  2BF3 B;  1G11 A;  2INP L;  3I5J E;  3DHI E; 
#chains in the Genus database with same CATH homology
 4GAM D;  3Q3O E;  3Q2A E;  2MOB A;  1HQI A;  2BF3 A;  1CKV A;  2BF2 A;  3Q3M E;  2BF5 A;  3RI7 E;  3GE3 E;  3Q14 E;  3Q3N E;  2INN L;  3I63 E;  3GE8 E;  3DHH E;  1G10 A;  2BF3 B;  1G11 A;  2INP L;  3I5J E;  3DHI E;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3GE8E

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations