3HXG | Genus

Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	52
sequence length	183
structure length	183
Chain Sequence	EFPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETILSIGRRIKERLELEDTIYFQPVSDQRSQTRGSDICTGKYEI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 183 atoms

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183 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Translation
source organism	Schistosoma mansoni
publication title	Structural insights into parasite EIF4E binding specificity for m7G and m2,2,7G mRNA cap. pubmed doi rcsb
molecule keywords	Eukaryotic Translation Initiation Factor 4E
total genus	52
structure length	183
sequence length	183
ec nomenclature
pdb deposition date	2009-06-20

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.760.10	Alpha Beta	2-Layer Sandwich	RNA Cap, Translation Initiation Factor Eif4e	RNA Cap, Translation Initiation Factor Eif4e	3hxgA01

1EJ4A 5EHCA 3HXGA 1IPCA 1L8BA 4UE9A 4UEDA 4B6UA 4B6VA 5ABVA 4UEBA 3M93A 5GW6A 1RF8A 1EJHA 2JGBA 1AP8A 2W97A 5ABXA 2W97B 1EJ1A 4AXGA 4AZAA 1IPBA 3AM7A 4TQCA 4TQBA 2V8XA 1ZTPA 4UECA 5EIRA 4BEAA 5T47A 5EI3A 4DT6A 5EKVA 4UEAA 5ABUA 5BXVA 1WKWA 5T46A 2IDRA 3M94A 2GPQA 5T48A 4TPWA 3HXIA 4DUMA 2IDVA 2WMCA 5ABYA 2JGCA 2Q4KA 4UE8A 3TF2A 3U7XA 2V8WA 2V8YA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1EJ4 A;  5EHC A;  3HXG A;  1IPC A;  1L8B A;  4UE9 A;  4UED A;  4B6U A;  4B6V A;  5ABV A;  4UEB A;  3M93 A;  5GW6 A;  1RF8 A;  1EJH A;  2JGB A;  1AP8 A;  2W97 A;  5ABX A;  2W97 B;  1EJ1 A;  4AXG A;  4AZA A;  1IPB A;  3AM7 A;  4TQC A;  4TQB A;  2V8X A;  1ZTP A;  4UEC A;  5EIR A;  4BEA A;  5T47 A;  5EI3 A;  4DT6 A;  5EKV A;  4UEA A;  5ABU A;  5BXV A;  1WKW A;  5T46 A;  2IDR A;  3M94 A;  2GPQ A;  5T48 A;  4TPW A;  3HXI A;  4DUM A;  2IDV A;  2WMC A;  5ABY A;  2JGC A;  2Q4K A;  4UE8 A;  3TF2 A;  3U7X A;  2V8W A;  2V8Y A; 
#chains in the Genus database with same CATH topology
 1EJ4 A;  5EHC A;  3HXG A;  1IPC A;  1L8B A;  4UE9 A;  4UED A;  4B6U A;  4B6V A;  5ABV A;  4UEB A;  3M93 A;  5GW6 A;  1RF8 A;  1EJH A;  2JGB A;  1AP8 A;  2W97 A;  5ABX A;  2W97 B;  1EJ1 A;  4AXG A;  4AZA A;  1IPB A;  3AM7 A;  4TQC A;  4TQB A;  2V8X A;  1ZTP A;  4UEC A;  5EIR A;  4BEA A;  5T47 A;  5EI3 A;  4DT6 A;  5EKV A;  4UEA A;  5ABU A;  5BXV A;  1WKW A;  5T46 A;  2IDR A;  3M94 A;  2GPQ A;  5T48 A;  4TPW A;  3HXI A;  4DUM A;  2IDV A;  2WMC A;  5ABY A;  2JGC A;  2Q4K A;  4UE8 A;  3TF2 A;  3U7X A;  2V8W A;  2V8Y A; 
#chains in the Genus database with same CATH homology
 1EJ4 A;  5EHC A;  3HXG A;  1IPC A;  1L8B A;  4UE9 A;  4UED A;  4B6U A;  4B6V A;  5ABV A;  4UEB A;  3M93 A;  5GW6 A;  1RF8 A;  1EJH A;  2JGB A;  1AP8 A;  2W97 A;  5ABX A;  2W97 B;  1EJ1 A;  4AXG A;  4AZA A;  1IPB A;  3AM7 A;  4TQC A;  4TQB A;  2V8X A;  1ZTP A;  4UEC A;  5EIR A;  4BEA A;  5T47 A;  5EI3 A;  4DT6 A;  5EKV A;  4UEA A;  5ABU A;  5BXV A;  1WKW A;  5T46 A;  2IDR A;  3M94 A;  2GPQ A;  5T48 A;  4TPW A;  3HXI A;  4DUM A;  2IDV A;  2WMC A;  5ABY A;  2JGC A;  2Q4K A;  4UE8 A;  3TF2 A;  3U7X A;  2V8W A;  2V8Y A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3HXGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN