The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
112
|
sequence length |
377
|
structure length |
377
|
Chain Sequence |
EFEFKQKYDYFRKKLKKPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKLPRAHTAFNRLDLPPYETFEDLREKLLMAVENAQG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Insights into ubiquitin transfer cascades from a structure of a UbcH5B approximately ubiquitin-HECT(NEDD4L) complex.
pubmed doi rcsb |
| molecule tags |
Ligase/signaling protein
|
| source organism |
Homo sapiens
|
| molecule keywords |
Ubiquitin-conjugating enzyme E2 D2
|
| total genus |
112
|
| structure length |
377
|
| sequence length |
377
|
| chains with identical sequence |
D
|
| ec nomenclature |
ec
2.3.2.26: HECT-type E3 ubiquitin transferase. |
| pdb deposition date | 2009-09-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF00632 | HECT | HECT-domain (ubiquitin-transferase) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Hect, E3 ligase catalytic domain | Hect, E3 ligase catalytic domain | ||
| Alpha Beta | 2-Layer Sandwich | Hect, E3 ligase catalytic fold | Hect, E3 ligase catalytic domain | ||
| Alpha Beta | Alpha-Beta Complex | Hect, E3 ligase catalytic domain fold | Hect, E3 ligase catalytic domains |
#chains in the Genus database with same CATH superfamily 3JW0 C; 1D5F A; 2XBB A; 2XBF A; 3H1D A; 1ZVD A; 3JVZ C; 1ND7 A; 2ONI A; 3PT3 A; 1C4Z A; 3OLM A; 3G1N A; #chains in the Genus database with same CATH topology 3JW0 C; 1D5F A; 2XBB A; 2XBF A; 3H1D A; 1ZVD A; 3JVZ C; 1ND7 A; 2ONI A; 3PT3 A; 1C4Z A; 3OLM A; 3G1N A; #chains in the Genus database with same CATH homology 3JW0 C; 1D5F A; 2XBB A; 2XBF A; 3H1D A; 1ZVD A; 3JVZ C; 1ND7 A; 2ONI A; 3PT3 A; 1C4Z A; 3OLM A; 3G1N A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
