3M6CA

Crystal structure of mycobacterium tuberculosis groel1 apical domain
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
194
structure length
194
Chain Sequence
ELEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKISSLPDLLPLLEKVAGTGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRVVVSKDDTVIVDGGGTAEAVANRAKHLRAEIDKSDSDWDREKLGERLAKLAGGVAVI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structural and functional conservation of Mycobacterium tuberculosis GroEL paralogs suggests that GroEL1 Is a chaperonin.
pubmed doi rcsb
molecule keywords 60 kDa chaperonin 1
molecule tags Chaperone
source organism Mycobacterium tuberculosis
total genus 58
structure length 194
sequence length 194
ec nomenclature
pdb deposition date 2010-03-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.7.10 Alpha Beta 3-Layer(bba) Sandwich GroEL GroEL 3m6cA00
3KTTB 3RTKA 1SVTA 1LA1A 1A6EB 1IOKA 1GMLA 1XCKA 1A6EA 1E0RB 3KFBA 1Q2VA 1KP8A 1A6DB 3KFEA 4HELA 4WSCA 1A6DA 1SX4A 1PCQA 3OSXA 1AONA 1GN1A 3KO1A 1Q3SA 5CDIA 4XCGA 3VZ6A 1FYAA 4XCDA 1OELA 1ASSA 1Q3RA 1SX3A 1FY9A 4WGLA 1DKDA 3M6CA 4PJ1A 4PKNA 1Q3QA 3E76A 2EU1A 3RUVA 1PF9A 3VZ7A 4KI8A 3RUWA 1SRVA 1ASXA 1SS8A 3AQ1B 3WVLA 1MNFA 1JONA 1DK7A 2NWCA 5CDJA 3VZ8A 1KIDA 1GRLA 1SJPA 3RUSA 5CDKA 4PKOA 3RUQA
chains in the Genus database with same CATH superfamily
3KTTB 3RTKA 1SVTA 1LA1A 1A6EB 1IOKA 1GMLA 1XCKA 1A6EA 1E0RB 3KFBA 1Q2VA 1KP8A 1A6DB 3KFEA 4HELA 4WSCA 1A6DA 1SX4A 1PCQA 3OSXA 1AONA 1GN1A 3KO1A 1Q3SA 5CDIA 4XCGA 3VZ6A 1FYAA 4XCDA 1OELA 1ASSA 1Q3RA 1SX3A 1FY9A 4WGLA 1DKDA 3M6CA 4PJ1A 4PKNA 1Q3QA 3E76A 2EU1A 3RUVA 1PF9A 3VZ7A 4KI8A 3RUWA 1SRVA 1ASXA 1SS8A 3AQ1B 3WVLA 1MNFA 1JONA 1DK7A 2NWCA 5CDJA 3VZ8A 1KIDA 1GRLA 1SJPA 3RUSA 5CDKA 4PKOA 3RUQA
chains in the Genus database with same CATH topology
3KTTB 3RTKA 1SVTA 1LA1A 1A6EB 1IOKA 1GMLA 1XCKA 1A6EA 1E0RB 3KFBA 1Q2VA 1KP8A 1A6DB 3KFEA 4HELA 4WSCA 1A6DA 1SX4A 1PCQA 3OSXA 1AONA 1GN1A 3KO1A 1Q3SA 5CDIA 4XCGA 3VZ6A 1FYAA 4XCDA 1OELA 1ASSA 1Q3RA 1SX3A 1FY9A 4WGLA 1DKDA 3M6CA 4PJ1A 4PKNA 1Q3QA 3E76A 2EU1A 3RUVA 1PF9A 3VZ7A 4KI8A 3RUWA 1SRVA 1ASXA 1SS8A 3AQ1B 3WVLA 1MNFA 1JONA 1DK7A 2NWCA 5CDJA 3VZ8A 1KIDA 1GRLA 1SJPA 3RUSA 5CDKA 4PKOA 3RUQA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3KTT B;  3RTK A;  1SVT A;  1LA1 A;  1A6E B;  1IOK A;  1GML A;  1XCK A;  1A6E A;  1E0R B;  3KFB A;  1Q2V A;  1KP8 A;  1A6D B;  3KFE A;  4HEL A;  4WSC A;  1A6D A;  1SX4 A;  1PCQ A;  3OSX A;  1AON A;  1GN1 A;  3KO1 A;  1Q3S A;  5CDI A;  4XCG A;  3VZ6 A;  1FYA A;  4XCD A;  1OEL A;  1ASS A;  1Q3R A;  1SX3 A;  1FY9 A;  4WGL A;  1DKD A;  3M6C A;  4PJ1 A;  4PKN A;  1Q3Q A;  3E76 A;  2EU1 A;  3RUV A;  1PF9 A;  3VZ7 A;  4KI8 A;  3RUW A;  1SRV A;  1ASX A;  1SS8 A;  3AQ1 B;  3WVL A;  1MNF A;  1JON A;  1DK7 A;  2NWC A;  5CDJ A;  3VZ8 A;  1KID A;  1GRL A;  1SJP A;  3RUS A;  5CDK A;  4PKO A;  3RUQ A; 
#chains in the Genus database with same CATH topology
 3KTT B;  3RTK A;  1SVT A;  1LA1 A;  1A6E B;  1IOK A;  1GML A;  1XCK A;  1A6E A;  1E0R B;  3KFB A;  1Q2V A;  1KP8 A;  1A6D B;  3KFE A;  4HEL A;  4WSC A;  1A6D A;  1SX4 A;  1PCQ A;  3OSX A;  1AON A;  1GN1 A;  3KO1 A;  1Q3S A;  5CDI A;  4XCG A;  3VZ6 A;  1FYA A;  4XCD A;  1OEL A;  1ASS A;  1Q3R A;  1SX3 A;  1FY9 A;  4WGL A;  1DKD A;  3M6C A;  4PJ1 A;  4PKN A;  1Q3Q A;  3E76 A;  2EU1 A;  3RUV A;  1PF9 A;  3VZ7 A;  4KI8 A;  3RUW A;  1SRV A;  1ASX A;  1SS8 A;  3AQ1 B;  3WVL A;  1MNF A;  1JON A;  1DK7 A;  2NWC A;  5CDJ A;  3VZ8 A;  1KID A;  1GRL A;  1SJP A;  3RUS A;  5CDK A;  4PKO A;  3RUQ A; 
#chains in the Genus database with same CATH homology
 3KTT B;  3RTK A;  1SVT A;  1LA1 A;  1A6E B;  1IOK A;  1GML A;  1XCK A;  1A6E A;  1E0R B;  3KFB A;  1Q2V A;  1KP8 A;  1A6D B;  3KFE A;  4HEL A;  4WSC A;  1A6D A;  1SX4 A;  1PCQ A;  3OSX A;  1AON A;  1GN1 A;  3KO1 A;  1Q3S A;  5CDI A;  4XCG A;  3VZ6 A;  1FYA A;  4XCD A;  1OEL A;  1ASS A;  1Q3R A;  1SX3 A;  1FY9 A;  4WGL A;  1DKD A;  3M6C A;  4PJ1 A;  4PKN A;  1Q3Q A;  3E76 A;  2EU1 A;  3RUV A;  1PF9 A;  3VZ7 A;  4KI8 A;  3RUW A;  1SRV A;  1ASX A;  1SS8 A;  3AQ1 B;  3WVL A;  1MNF A;  1JON A;  1DK7 A;  2NWC A;  5CDJ A;  3VZ8 A;  1KID A;  1GRL A;  1SJP A;  3RUS A;  5CDK A;  4PKO A;  3RUQ A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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