The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
29
|
sequence length |
156
|
structure length |
156
|
Chain Sequence |
SLDGIDDLEFVDENYYISPSLDTLATLSKYEIQKVENLVVGNKQYGKIEFLDPVDLSDIPLGSICDDLVVFQPMSVLLYNNSTNVPEKGKGLNVRARISCYNCYPLDKSTRKPIKDPNHRIMERYSEKLKKIPHTHFESYDPASGTYCFTVDHALE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata.
pubmed doi rcsb |
| molecule tags |
Protein transport
|
| source organism |
Candida glabrata
|
| molecule keywords |
Nucleoporin NUP116
|
| total genus |
29
|
| structure length |
156
|
| sequence length |
156
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2010-06-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04096 | Nucleoporin2 | Nucleoporin autopeptidase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | c-terminal autoproteolytic domain of nucleoporin nup98 | Peptidase S59, nucleoporin |
#chains in the Genus database with same CATH superfamily 5CWW A; 5E0Q B; 2Q5Y A; 5HB6 A; 3TKN C; 3KES A; 1KO6 A; 3NF5 A; 5HB5 A; 2AIV A; 2Q5X A; 3PBP B; 3KEP A; #chains in the Genus database with same CATH topology 4DRF B; 4DQZ A; 5CWW A; 5E0Q B; 2Q5Y A; 5HB6 A; 3TKN C; 3KES A; 4E6N B; 1KO6 A; 3NF5 A; 5HB5 A; 2AIV A; 2Q5X A; 3PBP B; 3KEP A; #chains in the Genus database with same CATH homology 5CWW A; 5E0Q B; 2Q5Y A; 5HB6 A; 3TKN C; 3KES A; 1KO6 A; 3NF5 A; 5HB5 A; 2AIV A; 2Q5X A; 3PBP B; 3KEP A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
