3OW2L

Crystal structure of enhanced macrolide bound to 50s ribosomal subunit
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
194
structure length
194
Chain Sequence
ARSAYSYIREAWKRPKEGQIAELMWHRMQEWRNEPAVVRIERPTRLDRARSLGYKAKQGIIVVRVAIRKGSSRRTRFNKGRRSKRMMVNRITRKKNIQRIAEERANRKFPNLRVLNSYSVGEDGRHKWHEVILIDPDHPAIKSDDQLSWISRTRHRLRTFRGLTSAGRRCRGLRGQGKGSEKVRPSLRVNGAKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RIBOSOMAL RNA
total genus 51
structure length 194
sequence length 194
ec nomenclature
pdb deposition date 2010-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00827 Ribosomal_L15e Ribosomal L15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1120.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e 3ow2L00
1VQOM 3CCMM 1YJWM 1QVFL 1KD1N 3G4SM 3CD6M 3I56M 3CCUM 3CXCL 3CMAM 1VQLM 1VQKM 1VQPM 1Q86N 2OTJM 3CPWL 1YITM 1K73N 1K8AN 1M90N 1KC8N 1QVGL 1Q7YN 3CCEM 3CC2M 3G71M 3I55M 1VQ7M 3CCJM 3CCLM 1YJNM 1N8RN 1YJ9M 3CCVM 3CCQM 1YHQM 1Q81N 3CCRM 1YI2M 1S72M 3CC4M 1VQ4M 1Q82N 1VQ8M 1W2BL 2QA4M 1K9MN 1M1KN 1NJIN 3CMEM 1VQMM 1VQ5M 3CCSM 3OW2L 1YIJM 1JJ2L 1KQSL 2QEXM 3CC7M 1VQ6M 1VQNM 1VQ9M 3G6EM 2OTLM
chains in the Genus database with same CATH superfamily
1VQOM 3CCMM 1YJWM 1QVFL 1KD1N 3G4SM 3CD6M 3I56M 3CCUM 3CXCL 3CMAM 1VQLM 1VQKM 1VQPM 1Q86N 2OTJM 3CPWL 1YITM 1K73N 1K8AN 1M90N 1KC8N 1QVGL 1Q7YN 3CCEM 3CC2M 3G71M 3I55M 1VQ7M 3CCJM 3CCLM 1YJNM 1N8RN 1YJ9M 3CCVM 3CCQM 1YHQM 1Q81N 3CCRM 1YI2M 1S72M 3CC4M 1VQ4M 1Q82N 1VQ8M 1W2BL 2QA4M 1K9MN 1M1KN 1NJIN 3CMEM 1VQMM 1VQ5M 3CCSM 3OW2L 1YIJM 1JJ2L 1KQSL 2QEXM 3CC7M 1VQ6M 1VQNM 1VQ9M 3G6EM 2OTLM
chains in the Genus database with same CATH topology
1VQOM 3CCMM 1YJWM 1QVFL 1KD1N 3G4SM 3CD6M 3I56M 3CCUM 3CXCL 3CMAM 1VQLM 1VQKM 1VQPM 1Q86N 2OTJM 3CPWL 1YITM 1K73N 1K8AN 1M90N 1KC8N 1QVGL 1Q7YN 3CCEM 3CC2M 3G71M 3I55M 1VQ7M 3CCJM 3CCLM 1YJNM 1N8RN 1YJ9M 3CCVM 3CCQM 1YHQM 1Q81N 3CCRM 1YI2M 1S72M 3CC4M 1VQ4M 1Q82N 1VQ8M 1W2BL 2QA4M 1K9MN 1M1KN 1NJIN 3CMEM 1VQMM 1VQ5M 3CCSM 3OW2L 1YIJM 1JJ2L 1KQSL 2QEXM 3CC7M 1VQ6M 1VQNM 1VQ9M 3G6EM 2OTLM
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1VQO M;  3CCM M;  1YJW M;  1QVF L;  1KD1 N;  3G4S M;  3CD6 M;  3I56 M;  3CCU M;  3CXC L;  3CMA M;  1VQL M;  1VQK M;  1VQP M;  1Q86 N;  2OTJ M;  3CPW L;  1YIT M;  1K73 N;  1K8A N;  1M90 N;  1KC8 N;  1QVG L;  1Q7Y N;  3CCE M;  3CC2 M;  3G71 M;  3I55 M;  1VQ7 M;  3CCJ M;  3CCL M;  1YJN M;  1N8R N;  1YJ9 M;  3CCV M;  3CCQ M;  1YHQ M;  1Q81 N;  3CCR M;  1YI2 M;  1S72 M;  3CC4 M;  1VQ4 M;  1Q82 N;  1VQ8 M;  1W2B L;  2QA4 M;  1K9M N;  1M1K N;  1NJI N;  3CME M;  1VQM M;  1VQ5 M;  3CCS M;  3OW2 L;  1YIJ M;  1JJ2 L;  1KQS L;  2QEX M;  3CC7 M;  1VQ6 M;  1VQN M;  1VQ9 M;  3G6E M;  2OTL M; 
#chains in the Genus database with same CATH topology
 1VQO M;  3CCM M;  1YJW M;  1QVF L;  1KD1 N;  3G4S M;  3CD6 M;  3I56 M;  3CCU M;  3CXC L;  3CMA M;  1VQL M;  1VQK M;  1VQP M;  1Q86 N;  2OTJ M;  3CPW L;  1YIT M;  1K73 N;  1K8A N;  1M90 N;  1KC8 N;  1QVG L;  1Q7Y N;  3CCE M;  3CC2 M;  3G71 M;  3I55 M;  1VQ7 M;  3CCJ M;  3CCL M;  1YJN M;  1N8R N;  1YJ9 M;  3CCV M;  3CCQ M;  1YHQ M;  1Q81 N;  3CCR M;  1YI2 M;  1S72 M;  3CC4 M;  1VQ4 M;  1Q82 N;  1VQ8 M;  1W2B L;  2QA4 M;  1K9M N;  1M1K N;  1NJI N;  3CME M;  1VQM M;  1VQ5 M;  3CCS M;  3OW2 L;  1YIJ M;  1JJ2 L;  1KQS L;  2QEX M;  3CC7 M;  1VQ6 M;  1VQN M;  1VQ9 M;  3G6E M;  2OTL M; 
#chains in the Genus database with same CATH homology
 1VQO M;  3CCM M;  1YJW M;  1QVF L;  1KD1 N;  3G4S M;  3CD6 M;  3I56 M;  3CCU M;  3CXC L;  3CMA M;  1VQL M;  1VQK M;  1VQP M;  1Q86 N;  2OTJ M;  3CPW L;  1YIT M;  1K73 N;  1K8A N;  1M90 N;  1KC8 N;  1QVG L;  1Q7Y N;  3CCE M;  3CC2 M;  3G71 M;  3I55 M;  1VQ7 M;  3CCJ M;  3CCL M;  1YJN M;  1N8R N;  1YJ9 M;  3CCV M;  3CCQ M;  1YHQ M;  1Q81 N;  3CCR M;  1YI2 M;  1S72 M;  3CC4 M;  1VQ4 M;  1Q82 N;  1VQ8 M;  1W2B L;  2QA4 M;  1K9M N;  1M1K N;  1NJI N;  3CME M;  1VQM M;  1VQ5 M;  3CCS M;  3OW2 L;  1YIJ M;  1JJ2 L;  1KQS L;  2QEX M;  3CC7 M;  1VQ6 M;  1VQN M;  1VQ9 M;  3G6E M;  2OTL M;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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