3SGTA

Crystal structure of e. coli undecaprenyl pyrophosphate synthase in complex with bph-1299
Total Genus 78

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
223
structure length
206
Chain Sequence
GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (20-25)AH1 (28-35)S5 (191-195)AH2 (39-60)3H1 (169-171)AH3 (89-103)S2 (64-69)EMPTYTI1 (113-116)AH4 (118-131)AH5 (147-164)TIV1 (142-145)AH6 (174-179)TI3 (183-186)TII1 (181-184)TI2 (131-134)TIV2 (201-204)TIV3 (203-206)S4 (138-142)S3 (106-110)Updating...
connected with : NaN
molecule tags Transferase/transferase inhibitor
source organism Escherichia coli o6
publication title Antibacterial drug leads targeting isoprenoid biosynthesis.
pubmed doi rcsb
molecule keywords Undecaprenyl pyrophosphate synthase
total genus 78
structure length 206
sequence length 223
chains with identical sequence B
ec nomenclature ec 2.5.1.31: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-
pdb deposition date 2011-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01255 Prenyltransf Putative undecaprenyl diphosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 3sgtA00
5HC6A 2E9CA 2VFWA 3SGTA 2E9DA 3TH8A 4U82A 2VG2A 3WQKA 2VG4A 4CMWA 4H2MA 2E9AA 5HXOA 2E99A 1JP3A 5HXPA 5HXTA 2VG1A 3QASA 5HC8A 3WQNA 3WYIA 4H38A 1UEHA 3SGVA 1X07A 4CMXA 5KH4A 3SH0A 3WQLA 2DTNA 1X06A 4Q9OA 1X08A 1X09A 4KT8A 5CQBA 4CMVA 5HXNA 4H3AA 5HXQA 4Q9MA 5HC7A 4ONCA 2D2RA 4H3CA 3SGXA 4H2OA 2E98A 5CQJA 4H2JA 4H8EA 1F75A 3WQMA 3WYJA 2VG0A 1V7UA 5KH2A 3UGSA 2VG3A 5KH5A
chains in the Genus database with same CATH superfamily
5HC6A 2E9CA 2VFWA 3SGTA 2E9DA 3TH8A 4U82A 2VG2A 3WQKA 2VG4A 4CMWA 4H2MA 2E9AA 5HXOA 2E99A 1JP3A 5HXPA 5HXTA 2VG1A 3QASA 5HC8A 3WQNA 3WYIA 4H38A 1UEHA 3SGVA 1X07A 4CMXA 5KH4A 3SH0A 3WQLA 2DTNA 1X06A 4Q9OA 1X08A 1X09A 4KT8A 5CQBA 4CMVA 5HXNA 4H3AA 5HXQA 4Q9MA 5HC7A 4ONCA 2D2RA 4H3CA 3SGXA 4H2OA 2E98A 5CQJA 4H2JA 4H8EA 1F75A 3WQMA 3WYJA 2VG0A 1V7UA 5KH2A 3UGSA 2VG3A 5KH5A
chains in the Genus database with same CATH topology
5HC6A 2E9CA 2VFWA 3SGTA 2E9DA 3TH8A 4U82A 2VG2A 3WQKA 2VG4A 4CMWA 4H2MA 2E9AA 5HXOA 2E99A 1JP3A 5HXPA 5HXTA 2VG1A 3QASA 5HC8A 3WQNA 3WYIA 4H38A 1UEHA 3SGVA 1X07A 4CMXA 5KH4A 3SH0A 3WQLA 2DTNA 1X06A 4Q9OA 1X08A 1X09A 4KT8A 5CQBA 4CMVA 5HXNA 4H3AA 5HXQA 4Q9MA 5HC7A 4ONCA 2D2RA 4H3CA 3SGXA 4H2OA 2E98A 5CQJA 4H2JA 4H8EA 1F75A 3WQMA 3WYJA 2VG0A 1V7UA 5KH2A 3UGSA 2VG3A 5KH5A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5HC6 A;  2E9C A;  2VFW A;  3SGT A;  2E9D A;  3TH8 A;  4U82 A;  2VG2 A;  3WQK A;  2VG4 A;  4CMW A;  4H2M A;  2E9A A;  5HXO A;  2E99 A;  1JP3 A;  5HXP A;  5HXT A;  2VG1 A;  3QAS A;  5HC8 A;  3WQN A;  3WYI A;  4H38 A;  1UEH A;  3SGV A;  1X07 A;  4CMX A;  5KH4 A;  3SH0 A;  3WQL A;  2DTN A;  1X06 A;  4Q9O A;  1X08 A;  1X09 A;  4KT8 A;  5CQB A;  4CMV A;  5HXN A;  4H3A A;  5HXQ A;  4Q9M A;  5HC7 A;  4ONC A;  2D2R A;  4H3C A;  3SGX A;  4H2O A;  2E98 A;  5CQJ A;  4H2J A;  4H8E A;  1F75 A;  3WQM A;  3WYJ A;  2VG0 A;  1V7U A;  5KH2 A;  3UGS A;  2VG3 A;  5KH5 A; 
#chains in the Genus database with same CATH topology
 5HC6 A;  2E9C A;  2VFW A;  3SGT A;  2E9D A;  3TH8 A;  4U82 A;  2VG2 A;  3WQK A;  2VG4 A;  4CMW A;  4H2M A;  2E9A A;  5HXO A;  2E99 A;  1JP3 A;  5HXP A;  5HXT A;  2VG1 A;  3QAS A;  5HC8 A;  3WQN A;  3WYI A;  4H38 A;  1UEH A;  3SGV A;  1X07 A;  4CMX A;  5KH4 A;  3SH0 A;  3WQL A;  2DTN A;  1X06 A;  4Q9O A;  1X08 A;  1X09 A;  4KT8 A;  5CQB A;  4CMV A;  5HXN A;  4H3A A;  5HXQ A;  4Q9M A;  5HC7 A;  4ONC A;  2D2R A;  4H3C A;  3SGX A;  4H2O A;  2E98 A;  5CQJ A;  4H2J A;  4H8E A;  1F75 A;  3WQM A;  3WYJ A;  2VG0 A;  1V7U A;  5KH2 A;  3UGS A;  2VG3 A;  5KH5 A; 
#chains in the Genus database with same CATH homology
 5HC6 A;  2E9C A;  2VFW A;  3SGT A;  2E9D A;  3TH8 A;  4U82 A;  2VG2 A;  3WQK A;  2VG4 A;  4CMW A;  4H2M A;  2E9A A;  5HXO A;  2E99 A;  1JP3 A;  5HXP A;  5HXT A;  2VG1 A;  3QAS A;  5HC8 A;  3WQN A;  3WYI A;  4H38 A;  1UEH A;  3SGV A;  1X07 A;  4CMX A;  5KH4 A;  3SH0 A;  3WQL A;  2DTN A;  1X06 A;  4Q9O A;  1X08 A;  1X09 A;  4KT8 A;  5CQB A;  4CMV A;  5HXN A;  4H3A A;  5HXQ A;  4Q9M A;  5HC7 A;  4ONC A;  2D2R A;  4H3C A;  3SGX A;  4H2O A;  2E98 A;  5CQJ A;  4H2J A;  4H8E A;  1F75 A;  3WQM A;  3WYJ A;  2VG0 A;  1V7U A;  5KH2 A;  3UGS A;  2VG3 A;  5KH5 A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite