3SGV | Genus

Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	83
sequence length	222
structure length	222
Chain Sequence	GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFAN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 222 atoms

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222 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli
publication title	Antibacterial drug leads targeting isoprenoid biosynthesis. pubmed doi rcsb
molecule keywords	Undecaprenyl pyrophosphate synthase
total genus	83
structure length	222
sequence length	222
chains with identical sequence	B
ec nomenclature	ec 2.5.1.31: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-
pdb deposition date	2011-06-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	3sgvA00

2D2RA 4H8EA 5HXNA 4U82A 4Q9OA 3TH8A 2VG3A 4ONCA 2VFWA 3WQLA 4Q9MA 3UGSA 1X07A 3SH0A 5KH5A 2E9AA 5KH2A 3SGVA 3WYJA 4KT8A 4CMVA 2E99A 2VG4A 2E9DA 2VG1A 4H3AA 4H38A 3WQKA 4CMWA 1X06A 5HC6A 5CQJA 5HXPA 1JP3A 5HC8A 4CMXA 3QASA 4H3CA 1V7UA 2VG2A 5HC7A 1F75A 1X09A 2E98A 4H2JA 5CQBA 2DTNA 3WYIA 5KH4A 3WQNA 1UEHA 4H2OA 2VG0A 3WQMA 5HXQA 3SGTA 3SGXA 4H2MA 1X08A 5HXOA 5HXTA 2E9CA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2D2R A;  4H8E A;  5HXN A;  4U82 A;  4Q9O A;  3TH8 A;  2VG3 A;  4ONC A;  2VFW A;  3WQL A;  4Q9M A;  3UGS A;  1X07 A;  3SH0 A;  5KH5 A;  2E9A A;  5KH2 A;  3SGV A;  3WYJ A;  4KT8 A;  4CMV A;  2E99 A;  2VG4 A;  2E9D A;  2VG1 A;  4H3A A;  4H38 A;  3WQK A;  4CMW A;  1X06 A;  5HC6 A;  5CQJ A;  5HXP A;  1JP3 A;  5HC8 A;  4CMX A;  3QAS A;  4H3C A;  1V7U A;  2VG2 A;  5HC7 A;  1F75 A;  1X09 A;  2E98 A;  4H2J A;  5CQB A;  2DTN A;  3WYI A;  5KH4 A;  3WQN A;  1UEH A;  4H2O A;  2VG0 A;  3WQM A;  5HXQ A;  3SGT A;  3SGX A;  4H2M A;  1X08 A;  5HXO A;  5HXT A;  2E9C A; 
#chains in the Genus database with same CATH topology
 2D2R A;  4H8E A;  5HXN A;  4U82 A;  4Q9O A;  3TH8 A;  2VG3 A;  4ONC A;  2VFW A;  3WQL A;  4Q9M A;  3UGS A;  1X07 A;  3SH0 A;  5KH5 A;  2E9A A;  5KH2 A;  3SGV A;  3WYJ A;  4KT8 A;  4CMV A;  2E99 A;  2VG4 A;  2E9D A;  2VG1 A;  4H3A A;  4H38 A;  3WQK A;  4CMW A;  1X06 A;  5HC6 A;  5CQJ A;  5HXP A;  1JP3 A;  5HC8 A;  4CMX A;  3QAS A;  4H3C A;  1V7U A;  2VG2 A;  5HC7 A;  1F75 A;  1X09 A;  2E98 A;  4H2J A;  5CQB A;  2DTN A;  3WYI A;  5KH4 A;  3WQN A;  1UEH A;  4H2O A;  2VG0 A;  3WQM A;  5HXQ A;  3SGT A;  3SGX A;  4H2M A;  1X08 A;  5HXO A;  5HXT A;  2E9C A; 
#chains in the Genus database with same CATH homology
 2D2R A;  4H8E A;  5HXN A;  4U82 A;  4Q9O A;  3TH8 A;  2VG3 A;  4ONC A;  2VFW A;  3WQL A;  4Q9M A;  3UGS A;  1X07 A;  3SH0 A;  5KH5 A;  2E9A A;  5KH2 A;  3SGV A;  3WYJ A;  4KT8 A;  4CMV A;  2E99 A;  2VG4 A;  2E9D A;  2VG1 A;  4H3A A;  4H38 A;  3WQK A;  4CMW A;  1X06 A;  5HC6 A;  5CQJ A;  5HXP A;  1JP3 A;  5HC8 A;  4CMX A;  3QAS A;  4H3C A;  1V7U A;  2VG2 A;  5HC7 A;  1F75 A;  1X09 A;  2E98 A;  4H2J A;  5CQB A;  2DTN A;  3WYI A;  5KH4 A;  3WQN A;  1UEH A;  4H2O A;  2VG0 A;  3WQM A;  5HXQ A;  3SGT A;  3SGX A;  4H2M A;  1X08 A;  5HXO A;  5HXT A;  2E9C A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3SGVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations