3SH0 | Genus

Total Genus 77

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	77
sequence length	223
structure length	206
Chain Sequence	GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 206 atoms

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206 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase/transferase inhibitor
source organism	Escherichia coli
publication title	Antibacterial drug leads targeting isoprenoid biosynthesis. pubmed doi rcsb
molecule keywords	Undecaprenyl pyrophosphate synthase
total genus	77
structure length	206
sequence length	223
chains with identical sequence	B
ec nomenclature	ec 2.5.1.31: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-
pdb deposition date	2011-06-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	3sh0A00

5CQBA 4H3AA 3QASA 4H38A 2D2RA 4H2OA 4Q9OA 4U82A 1UEHA 3UGSA 4H8EA 4ONCA 4CMXA 1X07A 3WQKA 4CMWA 5KH2A 2E99A 5HC8A 4H3CA 3WYIA 4Q9MA 3WQMA 1V7UA 5HC6A 5HXTA 2DTNA 4H2MA 2VG4A 5HXQA 2E9CA 5HXNA 1X09A 5HC7A 3SGTA 3SGVA 1X06A 3SGXA 2VG3A 3WQLA 3WQNA 2E9DA 5HXPA 3TH8A 1X08A 2VFWA 2VG2A 1JP3A 1F75A 4CMVA 3SH0A 5KH4A 3WYJA 2E9AA 4KT8A 5KH5A 2E98A 4H2JA 2VG0A 5HXOA 2VG1A 5CQJA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 5CQB A;  4H3A A;  3QAS A;  4H38 A;  2D2R A;  4H2O A;  4Q9O A;  4U82 A;  1UEH A;  3UGS A;  4H8E A;  4ONC A;  4CMX A;  1X07 A;  3WQK A;  4CMW A;  5KH2 A;  2E99 A;  5HC8 A;  4H3C A;  3WYI A;  4Q9M A;  3WQM A;  1V7U A;  5HC6 A;  5HXT A;  2DTN A;  4H2M A;  2VG4 A;  5HXQ A;  2E9C A;  5HXN A;  1X09 A;  5HC7 A;  3SGT A;  3SGV A;  1X06 A;  3SGX A;  2VG3 A;  3WQL A;  3WQN A;  2E9D A;  5HXP A;  3TH8 A;  1X08 A;  2VFW A;  2VG2 A;  1JP3 A;  1F75 A;  4CMV A;  3SH0 A;  5KH4 A;  3WYJ A;  2E9A A;  4KT8 A;  5KH5 A;  2E98 A;  4H2J A;  2VG0 A;  5HXO A;  2VG1 A;  5CQJ A; 
#chains in the Genus database with same CATH topology
 5CQB A;  4H3A A;  3QAS A;  4H38 A;  2D2R A;  4H2O A;  4Q9O A;  4U82 A;  1UEH A;  3UGS A;  4H8E A;  4ONC A;  4CMX A;  1X07 A;  3WQK A;  4CMW A;  5KH2 A;  2E99 A;  5HC8 A;  4H3C A;  3WYI A;  4Q9M A;  3WQM A;  1V7U A;  5HC6 A;  5HXT A;  2DTN A;  4H2M A;  2VG4 A;  5HXQ A;  2E9C A;  5HXN A;  1X09 A;  5HC7 A;  3SGT A;  3SGV A;  1X06 A;  3SGX A;  2VG3 A;  3WQL A;  3WQN A;  2E9D A;  5HXP A;  3TH8 A;  1X08 A;  2VFW A;  2VG2 A;  1JP3 A;  1F75 A;  4CMV A;  3SH0 A;  5KH4 A;  3WYJ A;  2E9A A;  4KT8 A;  5KH5 A;  2E98 A;  4H2J A;  2VG0 A;  5HXO A;  2VG1 A;  5CQJ A; 
#chains in the Genus database with same CATH homology
 5CQB A;  4H3A A;  3QAS A;  4H38 A;  2D2R A;  4H2O A;  4Q9O A;  4U82 A;  1UEH A;  3UGS A;  4H8E A;  4ONC A;  4CMX A;  1X07 A;  3WQK A;  4CMW A;  5KH2 A;  2E99 A;  5HC8 A;  4H3C A;  3WYI A;  4Q9M A;  3WQM A;  1V7U A;  5HC6 A;  5HXT A;  2DTN A;  4H2M A;  2VG4 A;  5HXQ A;  2E9C A;  5HXN A;  1X09 A;  5HC7 A;  3SGT A;  3SGV A;  1X06 A;  3SGX A;  2VG3 A;  3WQL A;  3WQN A;  2E9D A;  5HXP A;  3TH8 A;  1X08 A;  2VFW A;  2VG2 A;  1JP3 A;  1F75 A;  4CMV A;  3SH0 A;  5KH4 A;  3WYJ A;  2E9A A;  4KT8 A;  5KH5 A;  2E98 A;  4H2J A;  2VG0 A;  5HXO A;  2VG1 A;  5CQJ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3SH0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations