3SO2 | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	137
structure length	137
Chain Sequence	LRVHLLNEHAVLPKRGSAGAAGFDLASCEDTEVPARGRAVVKTGLQIAIPPGTYARVAPRSGLAVKHFIDTGAGVVDEDYRGEVGVVLFNHGETPFQVRRGDRVAQLILERIATPEVVEVESLDETTRGTGGYGSTG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Chlorella variabilis
publication title	Crystallization of Chlorella deoxyuridine triphosphatase. pubmed doi rcsb
molecule keywords	Putative uncharacterized protein
total genus	20
structure length	137
sequence length	137
ec nomenclature	ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date	2011-06-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00692	dUTPase	dUTPase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	3so2A00

3HZAA 4DHKA 3T70A 2D4LA 4B0HA 4GV8A 1F7OA 1DUNA 2PC5A 4XJCA 3KM3A 1F7RA 1XS1A 3TTAA 3ARNA 1SLHA 5F9KA 3GF0A 3ZEZA 3CA9A 3ZF6A 2J4HA 1XS6A 2HR6A 3TQZA 2Y8CA 1Q5HA 3TQ5A 2OKBA 4APZ1 3ZF2A 3ZF0A 2HXDA 1F7QA 2OL1A 2WE2A 1PKKA 4WRKA 3TQ3A 2OKDA 3F4FA 2HQUA 5EDDA 3LQWA 2XCEA 3C2TA 3ARAA 2V9XA 2WE1A 4GK6A 1SEHA 3P48A 1SYLA 3TP1A 3TQ4A 3C3IA 3TPWA 1F7NA 2D4MA 1XS4A 2J4QA 4GCYA 2HRMA 2OL0A 3HHQA 4OOPA 3T64A 1DUTA 1SJNA 3ZF3A 2WE0A 3TRNA 3ECYA 2HXBA 5ECTA 1PKHA 1PKJA 1DUCA 2YZJA 3SO2A 1SM8A 3ZF1A 2XY3A 3MDXA 1OGHA 2D4NA 1RN8A 1RNJA 1F7KA 3TSLA 3TPNA 2PY4A 2ZDCA 3ZF5A 3TPYA 3TS6A 3T60A 4LHRA 1F7PA 3H6XA 5CCTA 1DUPA 2QLPA 1VYQA 2WE3A 4A6AA 4AOZA 2R9QA 3TPSA 1SMCA 1MQ7A 4OOQA 3TRLA 3H6DA 1SNFA 2BAZA 2QXXA 1EUWA 1F7DA 3MBQA 2XCDA 1SIXA 2XX6A 2BT1A 2BSYA 2OKEA 3LOJA 3T6YA 4AOOA 1Q5UX 1DUDA 1EU5A 3EHWA 3ZF4A 4AO5A 2Y1TA 5CCOA 3I93A
chains in the Genus database with same CATH superfamily

3HZAA 4DHKA 3T70A 2D4LA 4B0HA 4GV8A 1F7OA 1DUNA 2PC5A 4XJCA 3KM3A 1F7RA 1XS1A 3TTAA 3ARNA 1SLHA 5F9KA 3GF0A 3ZEZA 3CA9A 3ZF6A 2J4HA 1XS6A 2HR6A 3TQZA 2Y8CA 1Q5HA 3TQ5A 2OKBA 4APZ1 3ZF2A 3ZF0A 2HXDA 1F7QA 2OL1A 2WE2A 1PKKA 4WRKA 3TQ3A 2OKDA 3F4FA 2HQUA 5EDDA 3LQWA 2XCEA 3C2TA 3ARAA 2V9XA 2WE1A 4GK6A 1SEHA 3P48A 1SYLA 3TP1A 3TQ4A 3C3IA 3TPWA 1F7NA 2D4MA 1XS4A 2J4QA 4GCYA 2HRMA 2OL0A 3HHQA 4OOPA 3T64A 1DUTA 1SJNA 3ZF3A 2WE0A 3TRNA 3ECYA 2HXBA 5ECTA 1PKHA 1PKJA 1DUCA 2YZJA 3SO2A 1SM8A 3ZF1A 2XY3A 3MDXA 1OGHA 2D4NA 1RN8A 1RNJA 1F7KA 3TSLA 3TPNA 2PY4A 2ZDCA 3ZF5A 3TPYA 3TS6A 3T60A 4LHRA 1F7PA 3H6XA 5CCTA 1DUPA 2QLPA 1VYQA 2WE3A 4A6AA 4AOZA 2R9QA 3TPSA 1SMCA 1MQ7A 4OOQA 3TRLA 3H6DA 1SNFA 2BAZA 2QXXA 1EUWA 1F7DA 3MBQA 2XCDA 1TULA 1SIXA 2XX6A 2BT1A 2BSYA 2OKEA 3LOJA 3T6YA 4AOOA 1Q5UX 1DUDA 1EU5A 3EHWA 3ZF4A 4AO5A 2Y1TA 5CCOA 3I93A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3HZA A;  4DHK A;  3T70 A;  2D4L A;  4B0H A;  4GV8 A;  1F7O A;  1DUN A;  2PC5 A;  4XJC A;  3KM3 A;  1F7R A;  1XS1 A;  3TTA A;  3ARN A;  1SLH A;  5F9K A;  3GF0 A;  3ZEZ A;  3CA9 A;  3ZF6 A;  2J4H A;  1XS6 A;  2HR6 A;  3TQZ A;  2Y8C A;  1Q5H A;  3TQ5 A;  2OKB A;  4APZ 1;  3ZF2 A;  3ZF0 A;  2HXD A;  1F7Q A;  2OL1 A;  2WE2 A;  1PKK A;  4WRK A;  3TQ3 A;  2OKD A;  3F4F A;  2HQU A;  5EDD A;  3LQW A;  2XCE A;  3C2T A;  3ARA A;  2V9X A;  2WE1 A;  4GK6 A;  1SEH A;  3P48 A;  1SYL A;  3TP1 A;  3TQ4 A;  3C3I A;  3TPW A;  1F7N A;  2D4M A;  1XS4 A;  2J4Q A;  4GCY A;  2HRM A;  2OL0 A;  3HHQ A;  4OOP A;  3T64 A;  1DUT A;  1SJN A;  3ZF3 A;  2WE0 A;  3TRN A;  3ECY A;  2HXB A;  5ECT A;  1PKH A;  1PKJ A;  1DUC A;  2YZJ A;  3SO2 A;  1SM8 A;  3ZF1 A;  2XY3 A;  3MDX A;  1OGH A;  2D4N A;  1RN8 A;  1RNJ A;  1F7K A;  3TSL A;  3TPN A;  2PY4 A;  2ZDC A;  3ZF5 A;  3TPY A;  3TS6 A;  3T60 A;  4LHR A;  1F7P A;  3H6X A;  5CCT A;  1DUP A;  2QLP A;  1VYQ A;  2WE3 A;  4A6A A;  4AOZ A;  2R9Q A;  3TPS A;  1SMC A;  1MQ7 A;  4OOQ A;  3TRL A;  3H6D A;  1SNF A;  2BAZ A;  2QXX A;  1EUW A;  1F7D A;  3MBQ A;  2XCD A;  1SIX A;  2XX6 A;  2BT1 A;  2BSY A;  2OKE A;  3LOJ A;  3T6Y A;  4AOO A;  1Q5U X;  1DUD A;  1EU5 A;  3EHW A;  3ZF4 A;  4AO5 A;  2Y1T A;  5CCO A;  3I93 A; 
#chains in the Genus database with same CATH topology
 3HZA A;  4DHK A;  3T70 A;  2D4L A;  4B0H A;  4GV8 A;  1F7O A;  1DUN A;  2PC5 A;  4XJC A;  3KM3 A;  1F7R A;  1XS1 A;  3TTA A;  3ARN A;  1SLH A;  5F9K A;  3GF0 A;  3ZEZ A;  3CA9 A;  3ZF6 A;  2J4H A;  1XS6 A;  2HR6 A;  3TQZ A;  2Y8C A;  1Q5H A;  3TQ5 A;  2OKB A;  4APZ 1;  3ZF2 A;  3ZF0 A;  2HXD A;  1F7Q A;  2OL1 A;  2WE2 A;  1PKK A;  4WRK A;  3TQ3 A;  2OKD A;  3F4F A;  2HQU A;  5EDD A;  3LQW A;  2XCE A;  3C2T A;  3ARA A;  2V9X A;  2WE1 A;  4GK6 A;  1SEH A;  3P48 A;  1SYL A;  3TP1 A;  3TQ4 A;  3C3I A;  3TPW A;  1F7N A;  2D4M A;  1XS4 A;  2J4Q A;  4GCY A;  2HRM A;  2OL0 A;  3HHQ A;  4OOP A;  3T64 A;  1DUT A;  1SJN A;  3ZF3 A;  2WE0 A;  3TRN A;  3ECY A;  2HXB A;  5ECT A;  1PKH A;  1PKJ A;  1DUC A;  2YZJ A;  3SO2 A;  1SM8 A;  3ZF1 A;  2XY3 A;  3MDX A;  1OGH A;  2D4N A;  1RN8 A;  1RNJ A;  1F7K A;  3TSL A;  3TPN A;  2PY4 A;  2ZDC A;  3ZF5 A;  3TPY A;  3TS6 A;  3T60 A;  4LHR A;  1F7P A;  3H6X A;  5CCT A;  1DUP A;  2QLP A;  1VYQ A;  2WE3 A;  4A6A A;  4AOZ A;  2R9Q A;  3TPS A;  1SMC A;  1MQ7 A;  4OOQ A;  3TRL A;  3H6D A;  1SNF A;  2BAZ A;  2QXX A;  1EUW A;  1F7D A;  3MBQ A;  2XCD A;  1TUL A;  1SIX A;  2XX6 A;  2BT1 A;  2BSY A;  2OKE A;  3LOJ A;  3T6Y A;  4AOO A;  1Q5U X;  1DUD A;  1EU5 A;  3EHW A;  3ZF4 A;  4AO5 A;  2Y1T A;  5CCO A;  3I93 A; 
#chains in the Genus database with same CATH homology
 3HZA A;  4DHK A;  3T70 A;  2D4L A;  4B0H A;  4GV8 A;  1F7O A;  1DUN A;  2PC5 A;  4XJC A;  3KM3 A;  1F7R A;  1XS1 A;  3TTA A;  3ARN A;  1SLH A;  5F9K A;  3GF0 A;  3ZEZ A;  3CA9 A;  3ZF6 A;  2J4H A;  1XS6 A;  2HR6 A;  3TQZ A;  2Y8C A;  1Q5H A;  3TQ5 A;  2OKB A;  4APZ 1;  3ZF2 A;  3ZF0 A;  2HXD A;  1F7Q A;  2OL1 A;  2WE2 A;  1PKK A;  4WRK A;  3TQ3 A;  2OKD A;  3F4F A;  2HQU A;  5EDD A;  3LQW A;  2XCE A;  3C2T A;  3ARA A;  2V9X A;  2WE1 A;  4GK6 A;  1SEH A;  3P48 A;  1SYL A;  3TP1 A;  3TQ4 A;  3C3I A;  3TPW A;  1F7N A;  2D4M A;  1XS4 A;  2J4Q A;  4GCY A;  2HRM A;  2OL0 A;  3HHQ A;  4OOP A;  3T64 A;  1DUT A;  1SJN A;  3ZF3 A;  2WE0 A;  3TRN A;  3ECY A;  2HXB A;  5ECT A;  1PKH A;  1PKJ A;  1DUC A;  2YZJ A;  3SO2 A;  1SM8 A;  3ZF1 A;  2XY3 A;  3MDX A;  1OGH A;  2D4N A;  1RN8 A;  1RNJ A;  1F7K A;  3TSL A;  3TPN A;  2PY4 A;  2ZDC A;  3ZF5 A;  3TPY A;  3TS6 A;  3T60 A;  4LHR A;  1F7P A;  3H6X A;  5CCT A;  1DUP A;  2QLP A;  1VYQ A;  2WE3 A;  4A6A A;  4AOZ A;  2R9Q A;  3TPS A;  1SMC A;  1MQ7 A;  4OOQ A;  3TRL A;  3H6D A;  1SNF A;  2BAZ A;  2QXX A;  1EUW A;  1F7D A;  3MBQ A;  2XCD A;  1SIX A;  2XX6 A;  2BT1 A;  2BSY A;  2OKE A;  3LOJ A;  3T6Y A;  4AOO A;  1Q5U X;  1DUD A;  1EU5 A;  3EHW A;  3ZF4 A;  4AO5 A;  2Y1T A;  5CCO A;  3I93 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3SO2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations