3TH8A

Structure of e. coli undecaprenyl diphosphate synthase complexed with bph-1063
Total Genus 76

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
223
structure length
205
Chain Sequence
GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (20-25)AH1 (28-35)O1 (24-26)AH2 (39-60)AH3 (96-103)S2 (64-69)EMPTYTIV1 (91-94)TI1 (90-93)TIV2 (92-95)AH5 (147-164)TI3 (113-116)AH6 (174-179)AH4 (118-131)TI4 (131-134)S4 (138-142)TIV3 (142-145)TI5 (183-186)3H1 (169-171)TIV4 (201-204)TIV5 (203-206)S5 (191-195)S3 (106-110)TII1 (181-184)Updating...
connected with : NaN
publication title HIV-1 Integrase Inhibitor-Inspired Antibacterials Targeting Isoprenoid Biosynthesis.
pubmed doi rcsb
molecule keywords Undecaprenyl pyrophosphate synthase
molecule tags Transferase/transferase inhibitor
source organism Escherichia coli
total genus 76
structure length 205
sequence length 223
chains with identical sequence B
ec nomenclature ec 2.5.1.31: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-
pdb deposition date 2011-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01255 Prenyltransf Putative undecaprenyl diphosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 3th8A00
1V7UA 5KH5A 4Q9MA 2E98A 5HXQA 2D2RA 2E9DA 4H3CA 5HC6A 3SGTA 3WQMA 5HXPA 1UEHA 5HC8A 3SGXA 4H8EA 3WQNA 5CQBA 4H2JA 4Q9OA 5CQJA 4H2MA 2E99A 4ONCA 3SGVA 3TH8A 1X06A 4CMVA 2VG3A 3WQLA 1F75A 4U82A 3UGSA 3WYJA 3WQKA 2VG4A 2VG1A 2DTNA 4H2OA 4H38A 5HC7A 2VFWA 5HXOA 5KH4A 4KT8A 3QASA 4CMWA 2E9AA 4H3AA 2VG2A 1X08A 1X07A 1JP3A 2VG0A 3WYIA 4CMXA 5KH2A 2E9CA 1X09A 3SH0A 5HXTA 5HXNA
chains in the Genus database with same CATH superfamily
1V7UA 5KH5A 4Q9MA 2E98A 5HXQA 2D2RA 2E9DA 4H3CA 5HC6A 3SGTA 3WQMA 5HXPA 1UEHA 5HC8A 3SGXA 4H8EA 3WQNA 5CQBA 4H2JA 4Q9OA 5CQJA 4H2MA 2E99A 4ONCA 3SGVA 3TH8A 1X06A 4CMVA 2VG3A 3WQLA 1F75A 4U82A 3UGSA 3WYJA 3WQKA 2VG4A 2VG1A 2DTNA 4H2OA 4H38A 5HC7A 2VFWA 5HXOA 5KH4A 4KT8A 3QASA 4CMWA 2E9AA 4H3AA 2VG2A 1X08A 1X07A 1JP3A 2VG0A 3WYIA 4CMXA 5KH2A 2E9CA 1X09A 3SH0A 5HXTA 5HXNA
chains in the Genus database with same CATH topology
1V7UA 5KH5A 4Q9MA 2E98A 5HXQA 2D2RA 2E9DA 4H3CA 5HC6A 3SGTA 3WQMA 5HXPA 1UEHA 5HC8A 3SGXA 4H8EA 3WQNA 5CQBA 4H2JA 4Q9OA 5CQJA 4H2MA 2E99A 4ONCA 3SGVA 3TH8A 1X06A 4CMVA 2VG3A 3WQLA 1F75A 4U82A 3UGSA 3WYJA 3WQKA 2VG4A 2VG1A 2DTNA 4H2OA 4H38A 5HC7A 2VFWA 5HXOA 5KH4A 4KT8A 3QASA 4CMWA 2E9AA 4H3AA 2VG2A 1X08A 1X07A 1JP3A 2VG0A 3WYIA 4CMXA 5KH2A 2E9CA 1X09A 3SH0A 5HXTA 5HXNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V7U A;  5KH5 A;  4Q9M A;  2E98 A;  5HXQ A;  2D2R A;  2E9D A;  4H3C A;  5HC6 A;  3SGT A;  3WQM A;  5HXP A;  1UEH A;  5HC8 A;  3SGX A;  4H8E A;  3WQN A;  5CQB A;  4H2J A;  4Q9O A;  5CQJ A;  4H2M A;  2E99 A;  4ONC A;  3SGV A;  3TH8 A;  1X06 A;  4CMV A;  2VG3 A;  3WQL A;  1F75 A;  4U82 A;  3UGS A;  3WYJ A;  3WQK A;  2VG4 A;  2VG1 A;  2DTN A;  4H2O A;  4H38 A;  5HC7 A;  2VFW A;  5HXO A;  5KH4 A;  4KT8 A;  3QAS A;  4CMW A;  2E9A A;  4H3A A;  2VG2 A;  1X08 A;  1X07 A;  1JP3 A;  2VG0 A;  3WYI A;  4CMX A;  5KH2 A;  2E9C A;  1X09 A;  3SH0 A;  5HXT A;  5HXN A; 
#chains in the Genus database with same CATH topology
 1V7U A;  5KH5 A;  4Q9M A;  2E98 A;  5HXQ A;  2D2R A;  2E9D A;  4H3C A;  5HC6 A;  3SGT A;  3WQM A;  5HXP A;  1UEH A;  5HC8 A;  3SGX A;  4H8E A;  3WQN A;  5CQB A;  4H2J A;  4Q9O A;  5CQJ A;  4H2M A;  2E99 A;  4ONC A;  3SGV A;  3TH8 A;  1X06 A;  4CMV A;  2VG3 A;  3WQL A;  1F75 A;  4U82 A;  3UGS A;  3WYJ A;  3WQK A;  2VG4 A;  2VG1 A;  2DTN A;  4H2O A;  4H38 A;  5HC7 A;  2VFW A;  5HXO A;  5KH4 A;  4KT8 A;  3QAS A;  4CMW A;  2E9A A;  4H3A A;  2VG2 A;  1X08 A;  1X07 A;  1JP3 A;  2VG0 A;  3WYI A;  4CMX A;  5KH2 A;  2E9C A;  1X09 A;  3SH0 A;  5HXT A;  5HXN A; 
#chains in the Genus database with same CATH homology
 1V7U A;  5KH5 A;  4Q9M A;  2E98 A;  5HXQ A;  2D2R A;  2E9D A;  4H3C A;  5HC6 A;  3SGT A;  3WQM A;  5HXP A;  1UEH A;  5HC8 A;  3SGX A;  4H8E A;  3WQN A;  5CQB A;  4H2J A;  4Q9O A;  5CQJ A;  4H2M A;  2E99 A;  4ONC A;  3SGV A;  3TH8 A;  1X06 A;  4CMV A;  2VG3 A;  3WQL A;  1F75 A;  4U82 A;  3UGS A;  3WYJ A;  3WQK A;  2VG4 A;  2VG1 A;  2DTN A;  4H2O A;  4H38 A;  5HC7 A;  2VFW A;  5HXO A;  5KH4 A;  4KT8 A;  3QAS A;  4CMW A;  2E9A A;  4H3A A;  2VG2 A;  1X08 A;  1X07 A;  1JP3 A;  2VG0 A;  3WYI A;  4CMX A;  5KH2 A;  2E9C A;  1X09 A;  3SH0 A;  5HXT A;  5HXN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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