3V3YH

Photosynthetic reaction center from rhodobacter sphaeroides strain rv
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
241
structure length
241
Chain Sequence
FDLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The site-directed mutation I(L177)H in Rhodobacter sphaeroides reaction center affects coordination of P(A) and B(B) bacteriochlorophylls.
pubmed doi rcsb
molecule tags Electron transport
source organism Rhodobacter sphaeroides
molecule keywords Reaction center protein H chain
total genus 57
structure length 241
sequence length 241
ec nomenclature
pdb deposition date 2011-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF05239 PRC PRC-barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2 3v3yH02
4.10.540.10 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic reaction centre, H subunit, N-terminal domain 3v3yH01
4IN6H 1DS8H 4H99H 3PRCH 1RY5H 1S00H 1K6NH 1R2CH 3DU3H 2UWVH 2JBLH 1F6NH 4TQQH 1PSTH 1VRNH 4CASD 2J8CH 1RQKH 1YF6H 2UXJH 7PRCH 1KBYH 2HH1H 2BOZH 1DV3H 4HBHH 2BNSC 1PCRH 1AIGH 2PRCH 2RCRH 2HJ6H 3ZUMH 4LWYH 1E14H 1YSTH 4N7LH 2UWSH 2UXKH 3G7FH 1K6LH 3WMMH 1AIJH 3T6EH 2GNUH 1RZZH 1FNPH 2BNPC 2WJNH 3DUQH 5LSEH 5PRCH 1JGWH 3V3ZH 2J8DH 1QOVH 6PRCH 2UWUH 1DV6H 1JGZH 1RG5H 1OGVH 1FNQH 1DXRH 2UXLH 1L9JH 2UX3H 4RCRH 1EYSH 2UX4H 2UX5H 2X5VH 3DSYH 1RVJH 2UWTH 2WJMH 1M3XH 2HHKH 1PSSH 1L9BH 1RZHH 2HG3H 1JGYH 2JIYH 1PRCH 4N7KH 1JH0H 2WX5H 3V3YH 2UXMH 4IN5H 4H9LH 4IN7H 1UMXH 2GMRH 2JJ0H 3D38H 3DTSH 2HG9H 3DU2H 4HBJH 3I4DH 1E6DH 3ZUWH 3DTRH 1JGXH 3T6DH 3DTAH 2I5NH 1MPSH 2HITH 1RGNH 2UWWH 5LRIH 2X5UH
chains in the Genus database with same CATH superfamily
4IN6H 1DS8H 4H99H 3PRCH 1RY5H 1S00H 1K6NH 1R2CH 3DU3H 2UWVH 2JBLH 1F6NH 4TQQH 1PSTH 1VRNH 4CASD 2J8CH 1RQKH 1YF6H 2UXJH 7PRCH 1KBYH 2HH1H 2BOZH 1DV3H 4HBHH 2BNSC 1PCRH 1AIGH 2PRCH 2RCRH 2HJ6H 3ZUMH 4LWYH 1E14H 1YSTH 4N7LH 2UWSH 2UXKH 3G7FH 1K6LH 3WMMH 1AIJH 3T6EH 2GNUH 1RZZH 1FNPH 2BNPC 2WJNH 3DUQH 5LSEH 5PRCH 1JGWH 3V3ZH 2J8DH 1QOVH 6PRCH 2UWUH 1DV6H 1JGZH 1RG5H 1OGVH 1FNQH 1DXRH 2UXLH 1L9JH 2UX3H 4RCRH 1EYSH 2UX4H 2UX5H 2X5VH 3DSYH 1RVJH 2UWTH 2WJMH 1M3XH 2HHKH 1PSSH 1L9BH 1RZHH 2HG3H 1JGYH 2JIYH 1PRCH 4N7KH 1JH0H 2WX5H 3V3YH 2UXMH 4IN5H 4H9LH 4IN7H 1UMXH 2GMRH 2JJ0H 3D38H 3DTSH 2HG9H 3DU2H 4HBJH 3I4DH 1E6DH 3ZUWH 3DTRH 1JGXH 3T6DH 3DTAH 2I5NH 1MPSH 2HITH 1RGNH 2UWWH 5LRIH 2X5UH
chains in the Genus database with same CATH topology
4IN6H 1DS8H 4H99H 3PRCH 1RY5H 1S00H 1K6NH 1R2CH 3DU3H 2UWVH 2JBLH 1F6NH 4TQQH 1PSTH 1VRNH 4CASD 2J8CH 1RQKH 1YF6H 2UXJH 7PRCH 1KBYH 2HH1H 2BOZH 1DV3H 4HBHH 2BNSC 1PCRH 1AIGH 2PRCH 2RCRH 2HJ6H 3ZUMH 4LWYH 1E14H 1YSTH 4N7LH 2UWSH 2UXKH 3G7FH 1K6LH 3WMMH 1AIJH 3T6EH 2GNUH 1RZZH 1FNPH 2BNPC 2WJNH 3DUQH 5LSEH 5PRCH 1JGWH 3V3ZH 2J8DH 1QOVH 6PRCH 2UWUH 1DV6H 1JGZH 1RG5H 1OGVH 1FNQH 1DXRH 2UXLH 1L9JH 2UX3H 4RCRH 1EYSH 2UX4H 2UX5H 2X5VH 3DSYH 1RVJH 2UWTH 2WJMH 1M3XH 2HHKH 1PSSH 1L9BH 1RZHH 2HG3H 1JGYH 2JIYH 1PRCH 4N7KH 1JH0H 2WX5H 3V3YH 2UXMH 4IN5H 4H9LH 4IN7H 1UMXH 2GMRH 2JJ0H 3D38H 3DTSH 2HG9H 3DU2H 4HBJH 3I4DH 1E6DH 3ZUWH 3DTRH 1JGXH 3T6DH 3DTAH 2I5NH 1MPSH 2HITH 1RGNH 2UWWH 5LRIH 2X5UH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IN6 H;  1DS8 H;  4H99 H;  3PRC H;  1RY5 H;  1S00 H;  1K6N H;  1R2C H;  3DU3 H;  2UWV H;  2JBL H;  1F6N H;  4TQQ H;  1PST H;  1VRN H;  4CAS D;  2J8C H;  1RQK H;  1YF6 H;  2UXJ H;  7PRC H;  1KBY H;  2HH1 H;  2BOZ H;  1DV3 H;  4HBH H;  2BNS C;  1PCR H;  1AIG H;  2PRC H;  2RCR H;  2HJ6 H;  3ZUM H;  4LWY H;  1E14 H;  1YST H;  4N7L H;  2UWS H;  2UXK H;  3G7F H;  1K6L H;  3WMM H;  1AIJ H;  3T6E H;  2GNU H;  1RZZ H;  1FNP H;  2BNP C;  2WJN H;  3DUQ H;  5LSE H;  5PRC H;  1JGW H;  3V3Z H;  2J8D H;  1QOV H;  6PRC H;  2UWU H;  1DV6 H;  1JGZ H;  1RG5 H;  1OGV H;  1FNQ H;  1DXR H;  2UXL H;  1L9J H;  2UX3 H;  4RCR H;  1EYS H;  2UX4 H;  2UX5 H;  2X5V H;  3DSY H;  1RVJ H;  2UWT H;  2WJM H;  1M3X H;  2HHK H;  1PSS H;  1L9B H;  1RZH H;  2HG3 H;  1JGY H;  2JIY H;  1PRC H;  4N7K H;  1JH0 H;  2WX5 H;  3V3Y H;  2UXM H;  4IN5 H;  4H9L H;  4IN7 H;  1UMX H;  2GMR H;  2JJ0 H;  3D38 H;  3DTS H;  2HG9 H;  3DU2 H;  4HBJ H;  3I4D H;  1E6D H;  3ZUW H;  3DTR H;  1JGX H;  3T6D H;  3DTA H;  2I5N H;  1MPS H;  2HIT H;  1RGN H;  2UWW H;  5LRI H;  2X5U H; 
#chains in the Genus database with same CATH topology
 4IN6 H;  1DS8 H;  4H99 H;  3PRC H;  1RY5 H;  1S00 H;  1K6N H;  1R2C H;  3DU3 H;  2UWV H;  2JBL H;  1F6N H;  4TQQ H;  1PST H;  1VRN H;  4CAS D;  2J8C H;  1RQK H;  1YF6 H;  2UXJ H;  7PRC H;  1KBY H;  2HH1 H;  2BOZ H;  1DV3 H;  4HBH H;  2BNS C;  1PCR H;  1AIG H;  2PRC H;  2RCR H;  2HJ6 H;  3ZUM H;  4LWY H;  1E14 H;  1YST H;  4N7L H;  2UWS H;  2UXK H;  3G7F H;  1K6L H;  3WMM H;  1AIJ H;  3T6E H;  2GNU H;  1RZZ H;  1FNP H;  2BNP C;  2WJN H;  3DUQ H;  5LSE H;  5PRC H;  1JGW H;  3V3Z H;  2J8D H;  1QOV H;  6PRC H;  2UWU H;  1DV6 H;  1JGZ H;  1RG5 H;  1OGV H;  1FNQ H;  1DXR H;  2UXL H;  1L9J H;  2UX3 H;  4RCR H;  1EYS H;  2UX4 H;  2UX5 H;  2X5V H;  3DSY H;  1RVJ H;  2UWT H;  2WJM H;  1M3X H;  2HHK H;  1PSS H;  1L9B H;  1RZH H;  2HG3 H;  1JGY H;  2JIY H;  1PRC H;  4N7K H;  1JH0 H;  2WX5 H;  3V3Y H;  2UXM H;  4IN5 H;  4H9L H;  4IN7 H;  1UMX H;  2GMR H;  2JJ0 H;  3D38 H;  3DTS H;  2HG9 H;  3DU2 H;  4HBJ H;  3I4D H;  1E6D H;  3ZUW H;  3DTR H;  1JGX H;  3T6D H;  3DTA H;  2I5N H;  1MPS H;  2HIT H;  1RGN H;  2UWW H;  5LRI H;  2X5U H; 
#chains in the Genus database with same CATH homology
 4IN6 H;  1DS8 H;  4H99 H;  3PRC H;  1RY5 H;  1S00 H;  1K6N H;  1R2C H;  3DU3 H;  2UWV H;  2JBL H;  1F6N H;  4TQQ H;  1PST H;  1VRN H;  4CAS D;  2J8C H;  1RQK H;  1YF6 H;  2UXJ H;  7PRC H;  1KBY H;  2HH1 H;  2BOZ H;  1DV3 H;  4HBH H;  2BNS C;  1PCR H;  1AIG H;  2PRC H;  2RCR H;  2HJ6 H;  3ZUM H;  4LWY H;  1E14 H;  1YST H;  4N7L H;  2UWS H;  2UXK H;  3G7F H;  1K6L H;  3WMM H;  1AIJ H;  3T6E H;  2GNU H;  1RZZ H;  1FNP H;  2BNP C;  2WJN H;  3DUQ H;  5LSE H;  5PRC H;  1JGW H;  3V3Z H;  2J8D H;  1QOV H;  6PRC H;  2UWU H;  1DV6 H;  1JGZ H;  1RG5 H;  1OGV H;  1FNQ H;  1DXR H;  2UXL H;  1L9J H;  2UX3 H;  4RCR H;  1EYS H;  2UX4 H;  2UX5 H;  2X5V H;  3DSY H;  1RVJ H;  2UWT H;  2WJM H;  1M3X H;  2HHK H;  1PSS H;  1L9B H;  1RZH H;  2HG3 H;  1JGY H;  2JIY H;  1PRC H;  4N7K H;  1JH0 H;  2WX5 H;  3V3Y H;  2UXM H;  4IN5 H;  4H9L H;  4IN7 H;  1UMX H;  2GMR H;  2JJ0 H;  3D38 H;  3DTS H;  2HG9 H;  3DU2 H;  4HBJ H;  3I4D H;  1E6D H;  3ZUW H;  3DTR H;  1JGX H;  3T6D H;  3DTA H;  2I5N H;  1MPS H;  2HIT H;  1RGN H;  2UWW H;  5LRI H;  2X5U H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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