3WJT | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	178
structure length	178
Chain Sequence	PGKSPDSPQWRQHQQDVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPDGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGYDTKTQPAMPANMELTDGGQRIKLKMDNWIVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 178 atoms

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178 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran pubmed doi rcsb
molecule keywords	Outer-membrane lipoprotein LolB
molecule tags	Transport protein
source organism	Escherichia coli
total genus	44
structure length	178
sequence length	178
ec nomenclature
pdb deposition date	2013-10-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.10	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	Lipoprotein localisation LolA/LolB/LppX	3wjtA00

3M4WA 3BK5A 2YZYA 2ZPCA 2V43A 3BUUA 3WJTA 4KI3A 2P4BA 2V42A 3KSNA 1IWLA 1IWNA 3WJUA 2W7QA 2ZPDA 1UA8A 4MXTA 4Z48A 3WJVA 1IWMA
chains in the Genus database with same CATH superfamily

3M4WA 3BK5A 2YZYA 3BMZA 4EG9A 2ZPCA 2V43A 4EGDA 3BUUA 3WJTA 2P4BA 4KI3A 2ZF3A 3MH9A 2V42A 3KSNA 1IWLA 4QA8A 1IWNA 2ZF4A 3WJUA 2W7QA 2ZPDA 3MHAA 1UA8A 2BYOA 4MXTA 3MH8A 4Z48A 3WJVA 4ZRAA 1IWMA
chains in the Genus database with same CATH topology

3M4WA 3BK5A 2YZYA 2ZPCA 2V43A 3BUUA 3WJTA 4KI3A 2P4BA 2V42A 3KSNA 1IWLA 1IWNA 3WJUA 2W7QA 2ZPDA 1UA8A 4MXTA 4Z48A 3WJVA 1IWMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3M4W A;  3BK5 A;  2YZY A;  2ZPC A;  2V43 A;  3BUU A;  3WJT A;  4KI3 A;  2P4B A;  2V42 A;  3KSN A;  1IWL A;  1IWN A;  3WJU A;  2W7Q A;  2ZPD A;  1UA8 A;  4MXT A;  4Z48 A;  3WJV A;  1IWM A; 
#chains in the Genus database with same CATH topology
 3M4W A;  3BK5 A;  2YZY A;  3BMZ A;  4EG9 A;  2ZPC A;  2V43 A;  4EGD A;  3BUU A;  3WJT A;  2P4B A;  4KI3 A;  2ZF3 A;  3MH9 A;  2V42 A;  3KSN A;  1IWL A;  4QA8 A;  1IWN A;  2ZF4 A;  3WJU A;  2W7Q A;  2ZPD A;  3MHA A;  1UA8 A;  2BYO A;  4MXT A;  3MH8 A;  4Z48 A;  3WJV A;  4ZRA A;  1IWM A; 
#chains in the Genus database with same CATH homology
 3M4W A;  3BK5 A;  2YZY A;  2ZPC A;  2V43 A;  3BUU A;  3WJT A;  4KI3 A;  2P4B A;  2V42 A;  3KSN A;  1IWL A;  1IWN A;  3WJU A;  2W7Q A;  2ZPD A;  1UA8 A;  4MXT A;  4Z48 A;  3WJV A;  1IWM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3WJTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN