3WJU | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	178
structure length	178
Chain Sequence	PGKSPDSPQWRQHQQDVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPDGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGYDTKTQPAMPANMELTDGGQRIKLKMDNWIVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 178 atoms

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178 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran pubmed doi rcsb
molecule keywords	Outer-membrane lipoprotein LolB
molecule tags	Transport protein
source organism	Escherichia coli
total genus	36
structure length	178
sequence length	178
ec nomenclature
pdb deposition date	2013-10-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.10	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	Lipoprotein localisation LolA/LolB/LppX	3wjuA00

3WJTA 1IWNA 3BUUA 2V43A 3WJUA 4KI3A 2P4BA 3WJVA 2W7QA 2V42A 1UA8A 1IWMA 4Z48A 3BK5A 1IWLA 2ZPCA 2YZYA 3M4WA 3KSNA 4MXTA 2ZPDA
chains in the Genus database with same CATH superfamily

3WJTA 1IWNA 3BUUA 2V43A 3MH9A 4EG9A 3WJUA 4KI3A 2P4BA 3WJVA 2W7QA 2ZF3A 2V42A 4ZRAA 4MXTA 3MH8A 3MHAA 1UA8A 1IWMA 4Z48A 3BK5A 1IWLA 2ZPCA 2BYOA 2YZYA 3M4WA 4EGDA 3KSNA 4QA8A 3BMZA 2ZF4A 2ZPDA
chains in the Genus database with same CATH topology

3WJTA 1IWNA 3BUUA 2V43A 3WJUA 4KI3A 2P4BA 3WJVA 2W7QA 2V42A 1UA8A 1IWMA 4Z48A 3BK5A 1IWLA 2ZPCA 2YZYA 3M4WA 3KSNA 4MXTA 2ZPDA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3WJT A;  1IWN A;  3BUU A;  2V43 A;  3WJU A;  4KI3 A;  2P4B A;  3WJV A;  2W7Q A;  2V42 A;  1UA8 A;  1IWM A;  4Z48 A;  3BK5 A;  1IWL A;  2ZPC A;  2YZY A;  3M4W A;  3KSN A;  4MXT A;  2ZPD A; 
#chains in the Genus database with same CATH topology
 3WJT A;  1IWN A;  3BUU A;  2V43 A;  3MH9 A;  4EG9 A;  3WJU A;  4KI3 A;  2P4B A;  3WJV A;  2W7Q A;  2ZF3 A;  2V42 A;  4ZRA A;  4MXT A;  3MH8 A;  3MHA A;  1UA8 A;  1IWM A;  4Z48 A;  3BK5 A;  1IWL A;  2ZPC A;  2BYO A;  2YZY A;  3M4W A;  4EGD A;  3KSN A;  4QA8 A;  3BMZ A;  2ZF4 A;  2ZPD A; 
#chains in the Genus database with same CATH homology
 3WJT A;  1IWN A;  3BUU A;  2V43 A;  3WJU A;  4KI3 A;  2P4B A;  3WJV A;  2W7Q A;  2V42 A;  1UA8 A;  1IWM A;  4Z48 A;  3BK5 A;  1IWL A;  2ZPC A;  2YZY A;  3M4W A;  3KSN A;  4MXT A;  2ZPD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3WJUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN