3WQL | Genus

Total Genus 92

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	92
sequence length	293
structure length	283
Chain Sequence	NLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure and inhibition of tuberculosinol synthase and decaprenyl diphosphate synthase from Mycobacterium tuberculosis. pubmed doi rcsb
molecule keywords	Diterpene synthase
molecule tags	Hydrolase
source organism	Mycobacterium tuberculosis
total genus	92
structure length	283
sequence length	293
chains with identical sequence	B, C, D
ec nomenclature	ec 3.1.7.8: Tuberculosinol synthase.
pdb deposition date	2014-01-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	3wqlA01

5HXQA 5HXTA 2E9AA 3WQKA 4Q9OA 3WQNA 5HC8A 2E98A 2D2RA 2VG1A 4ONCA 4H2OA 4U82A 5CQJA 3SGXA 5HXPA 3WYJA 5HXNA 2VFWA 1UEHA 2DTNA 1X07A 1X06A 5HC6A 2E99A 1F75A 4CMWA 5HXOA 1V7UA 4Q9MA 3UGSA 5CQBA 4H8EA 3SGVA 3WQLA 2VG2A 4H3AA 5KH5A 4CMXA 1X08A 4CMVA 3WQMA 3SH0A 5HC7A 1X09A 4H2JA 2VG0A 4H2MA 2VG3A 1JP3A 4H3CA 3SGTA 3TH8A 5KH2A 4H38A 5KH4A 3WYIA 2VG4A 2E9DA 2E9CA 3QASA 4KT8A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 5HXQ A;  5HXT A;  2E9A A;  3WQK A;  4Q9O A;  3WQN A;  5HC8 A;  2E98 A;  2D2R A;  2VG1 A;  4ONC A;  4H2O A;  4U82 A;  5CQJ A;  3SGX A;  5HXP A;  3WYJ A;  5HXN A;  2VFW A;  1UEH A;  2DTN A;  1X07 A;  1X06 A;  5HC6 A;  2E99 A;  1F75 A;  4CMW A;  5HXO A;  1V7U A;  4Q9M A;  3UGS A;  5CQB A;  4H8E A;  3SGV A;  3WQL A;  2VG2 A;  4H3A A;  5KH5 A;  4CMX A;  1X08 A;  4CMV A;  3WQM A;  3SH0 A;  5HC7 A;  1X09 A;  4H2J A;  2VG0 A;  4H2M A;  2VG3 A;  1JP3 A;  4H3C A;  3SGT A;  3TH8 A;  5KH2 A;  4H38 A;  5KH4 A;  3WYI A;  2VG4 A;  2E9D A;  2E9C A;  3QAS A;  4KT8 A; 
#chains in the Genus database with same CATH topology
 5HXQ A;  5HXT A;  2E9A A;  3WQK A;  4Q9O A;  3WQN A;  5HC8 A;  2E98 A;  2D2R A;  2VG1 A;  4ONC A;  4H2O A;  4U82 A;  5CQJ A;  3SGX A;  5HXP A;  3WYJ A;  5HXN A;  2VFW A;  1UEH A;  2DTN A;  1X07 A;  1X06 A;  5HC6 A;  2E99 A;  1F75 A;  4CMW A;  5HXO A;  1V7U A;  4Q9M A;  3UGS A;  5CQB A;  4H8E A;  3SGV A;  3WQL A;  2VG2 A;  4H3A A;  5KH5 A;  4CMX A;  1X08 A;  4CMV A;  3WQM A;  3SH0 A;  5HC7 A;  1X09 A;  4H2J A;  2VG0 A;  4H2M A;  2VG3 A;  1JP3 A;  4H3C A;  3SGT A;  3TH8 A;  5KH2 A;  4H38 A;  5KH4 A;  3WYI A;  2VG4 A;  2E9D A;  2E9C A;  3QAS A;  4KT8 A; 
#chains in the Genus database with same CATH homology
 5HXQ A;  5HXT A;  2E9A A;  3WQK A;  4Q9O A;  3WQN A;  5HC8 A;  2E98 A;  2D2R A;  2VG1 A;  4ONC A;  4H2O A;  4U82 A;  5CQJ A;  3SGX A;  5HXP A;  3WYJ A;  5HXN A;  2VFW A;  1UEH A;  2DTN A;  1X07 A;  1X06 A;  5HC6 A;  2E99 A;  1F75 A;  4CMW A;  5HXO A;  1V7U A;  4Q9M A;  3UGS A;  5CQB A;  4H8E A;  3SGV A;  3WQL A;  2VG2 A;  4H3A A;  5KH5 A;  4CMX A;  1X08 A;  4CMV A;  3WQM A;  3SH0 A;  5HC7 A;  1X09 A;  4H2J A;  2VG0 A;  4H2M A;  2VG3 A;  1JP3 A;  4H3C A;  3SGT A;  3TH8 A;  5KH2 A;  4H38 A;  5KH4 A;  3WYI A;  2VG4 A;  2E9D A;  2E9C A;  3QAS A;  4KT8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3WQLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN