3WQM | Genus

Total Genus 98

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	98
sequence length	297
structure length	294
Chain Sequence	AMNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 294 atoms

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294 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure and inhibition of tuberculosinol synthase and decaprenyl diphosphate synthase from Mycobacterium tuberculosis. pubmed doi rcsb
molecule keywords	Diterpene synthase
molecule tags	Hydrolase/hydrolase inhibitor
source organism	Mycobacterium tuberculosis
total genus	98
structure length	294
sequence length	297
ec nomenclature	ec 3.1.7.8: Tuberculosinol synthase.
pdb deposition date	2014-01-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	3wqmA01

1V7UA 5KH5A 4Q9MA 2E98A 5HXQA 2D2RA 2E9DA 4H3CA 5HC6A 3SGTA 3WQMA 5HXPA 1UEHA 5HC8A 3SGXA 4H8EA 3WQNA 5CQBA 4H2JA 4Q9OA 5CQJA 4H2MA 2E99A 4ONCA 3SGVA 3TH8A 1X06A 4CMVA 2VG3A 3WQLA 1F75A 4U82A 3UGSA 3WYJA 3WQKA 2VG4A 2VG1A 2DTNA 4H2OA 4H38A 5HC7A 2VFWA 5HXOA 5KH4A 4KT8A 3QASA 4CMWA 2E9AA 4H3AA 2VG2A 1X08A 1X07A 1JP3A 2VG0A 3WYIA 4CMXA 5KH2A 2E9CA 1X09A 3SH0A 5HXTA 5HXNA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1V7U A;  5KH5 A;  4Q9M A;  2E98 A;  5HXQ A;  2D2R A;  2E9D A;  4H3C A;  5HC6 A;  3SGT A;  3WQM A;  5HXP A;  1UEH A;  5HC8 A;  3SGX A;  4H8E A;  3WQN A;  5CQB A;  4H2J A;  4Q9O A;  5CQJ A;  4H2M A;  2E99 A;  4ONC A;  3SGV A;  3TH8 A;  1X06 A;  4CMV A;  2VG3 A;  3WQL A;  1F75 A;  4U82 A;  3UGS A;  3WYJ A;  3WQK A;  2VG4 A;  2VG1 A;  2DTN A;  4H2O A;  4H38 A;  5HC7 A;  2VFW A;  5HXO A;  5KH4 A;  4KT8 A;  3QAS A;  4CMW A;  2E9A A;  4H3A A;  2VG2 A;  1X08 A;  1X07 A;  1JP3 A;  2VG0 A;  3WYI A;  4CMX A;  5KH2 A;  2E9C A;  1X09 A;  3SH0 A;  5HXT A;  5HXN A; 
#chains in the Genus database with same CATH topology
 1V7U A;  5KH5 A;  4Q9M A;  2E98 A;  5HXQ A;  2D2R A;  2E9D A;  4H3C A;  5HC6 A;  3SGT A;  3WQM A;  5HXP A;  1UEH A;  5HC8 A;  3SGX A;  4H8E A;  3WQN A;  5CQB A;  4H2J A;  4Q9O A;  5CQJ A;  4H2M A;  2E99 A;  4ONC A;  3SGV A;  3TH8 A;  1X06 A;  4CMV A;  2VG3 A;  3WQL A;  1F75 A;  4U82 A;  3UGS A;  3WYJ A;  3WQK A;  2VG4 A;  2VG1 A;  2DTN A;  4H2O A;  4H38 A;  5HC7 A;  2VFW A;  5HXO A;  5KH4 A;  4KT8 A;  3QAS A;  4CMW A;  2E9A A;  4H3A A;  2VG2 A;  1X08 A;  1X07 A;  1JP3 A;  2VG0 A;  3WYI A;  4CMX A;  5KH2 A;  2E9C A;  1X09 A;  3SH0 A;  5HXT A;  5HXN A; 
#chains in the Genus database with same CATH homology
 1V7U A;  5KH5 A;  4Q9M A;  2E98 A;  5HXQ A;  2D2R A;  2E9D A;  4H3C A;  5HC6 A;  3SGT A;  3WQM A;  5HXP A;  1UEH A;  5HC8 A;  3SGX A;  4H8E A;  3WQN A;  5CQB A;  4H2J A;  4Q9O A;  5CQJ A;  4H2M A;  2E99 A;  4ONC A;  3SGV A;  3TH8 A;  1X06 A;  4CMV A;  2VG3 A;  3WQL A;  1F75 A;  4U82 A;  3UGS A;  3WYJ A;  3WQK A;  2VG4 A;  2VG1 A;  2DTN A;  4H2O A;  4H38 A;  5HC7 A;  2VFW A;  5HXO A;  5KH4 A;  4KT8 A;  3QAS A;  4CMW A;  2E9A A;  4H3A A;  2VG2 A;  1X08 A;  1X07 A;  1JP3 A;  2VG0 A;  3WYI A;  4CMX A;  5KH2 A;  2E9C A;  1X09 A;  3SH0 A;  5HXT A;  5HXN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3WQMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN