3WVD | Genus

Total Genus 59

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	59
sequence length	196
structure length	194
Chain Sequence	NAAPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCSLSTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Rhodococcus erythropolis
publication title	Time-Resolved Crystallography of the Reaction Intermediate of Nitrile Hydratase: Revealing a Role for the Cysteinesulfenic Acid Ligand as a Catalytic Nucleophile. pubmed doi rcsb
molecule keywords	Nitrile hydratase subunit alpha
total genus	59
structure length	194
sequence length	196
ec nomenclature	ec 4.2.1.84: Nitrile hydratase.
pdb deposition date	2014-05-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02979	NHase_alpha	Nitrile hydratase, alpha chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase; Chain A	Nitrile hydratase alpha /Thiocyanate hydrolase gamma	3wvdA00

4OB0A 2CZ6A 4OB3A 1V29A 2ZPIA 3A8HA 3X24A 1AHJA 2ZZDC 2CZ1A 2ZPFA 2CZ7A 3QZ5A 3QZ9A 2ZPBA 4ZGEA 2CYZA 3X25A 1IREA 3A8OA 3WVEA 3WVDA 1UGSA 4OB1A 2ZPGA 3VYGC 2ZPHA 2DXCC 3A8LA 2DD4C 4FM4A 4ZGDA 2ZPEA 1UGRA 2DD5C 3QYGA 2CZ0A 3X20A 4ZGJA 2DPPA 2AHJA 4OB2A 1UGQA 3HHTA 3X28A 2D0QA 2QDYA 3QYHA 3A8MA 3VYHA 3A8GA 3QXEA 3X26A 2ZCFA 2DXBC 1UGPA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4OB0 A;  2CZ6 A;  4OB3 A;  1V29 A;  2ZPI A;  3A8H A;  3X24 A;  1AHJ A;  2ZZD C;  2CZ1 A;  2ZPF A;  2CZ7 A;  3QZ5 A;  3QZ9 A;  2ZPB A;  4ZGE A;  2CYZ A;  3X25 A;  1IRE A;  3A8O A;  3WVE A;  3WVD A;  1UGS A;  4OB1 A;  2ZPG A;  3VYG C;  2ZPH A;  2DXC C;  3A8L A;  2DD4 C;  4FM4 A;  4ZGD A;  2ZPE A;  1UGR A;  2DD5 C;  3QYG A;  2CZ0 A;  3X20 A;  4ZGJ A;  2DPP A;  2AHJ A;  4OB2 A;  1UGQ A;  3HHT A;  3X28 A;  2D0Q A;  2QDY A;  3QYH A;  3A8M A;  3VYH A;  3A8G A;  3QXE A;  3X26 A;  2ZCF A;  2DXB C;  1UGP A; 
#chains in the Genus database with same CATH topology
 4OB0 A;  2CZ6 A;  4OB3 A;  1V29 A;  2ZPI A;  3A8H A;  3X24 A;  1AHJ A;  2ZZD C;  2CZ1 A;  2ZPF A;  2CZ7 A;  3QZ5 A;  3QZ9 A;  2ZPB A;  4ZGE A;  2CYZ A;  3X25 A;  1IRE A;  3A8O A;  3WVE A;  3WVD A;  1UGS A;  4OB1 A;  2ZPG A;  3VYG C;  2ZPH A;  2DXC C;  3A8L A;  2DD4 C;  4FM4 A;  4ZGD A;  2ZPE A;  1UGR A;  2DD5 C;  3QYG A;  2CZ0 A;  3X20 A;  4ZGJ A;  2DPP A;  2AHJ A;  4OB2 A;  1UGQ A;  3HHT A;  3X28 A;  2D0Q A;  2QDY A;  3QYH A;  3A8M A;  3VYH A;  3A8G A;  3QXE A;  3X26 A;  2ZCF A;  2DXB C;  1UGP A; 
#chains in the Genus database with same CATH homology
 4OB0 A;  2CZ6 A;  4OB3 A;  1V29 A;  2ZPI A;  3A8H A;  3X24 A;  1AHJ A;  2ZZD C;  2CZ1 A;  2ZPF A;  2CZ7 A;  3QZ5 A;  3QZ9 A;  2ZPB A;  4ZGE A;  2CYZ A;  3X25 A;  1IRE A;  3A8O A;  3WVE A;  3WVD A;  1UGS A;  4OB1 A;  2ZPG A;  3VYG C;  2ZPH A;  2DXC C;  3A8L A;  2DD4 C;  4FM4 A;  4ZGD A;  2ZPE A;  1UGR A;  2DD5 C;  3QYG A;  2CZ0 A;  3X20 A;  4ZGJ A;  2DPP A;  2AHJ A;  4OB2 A;  1UGQ A;  3HHT A;  3X28 A;  2D0Q A;  2QDY A;  3QYH A;  3A8M A;  3VYH A;  3A8G A;  3QXE A;  3X26 A;  2ZCF A;  2DXB C;  1UGP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3WVDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations