3A0D | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	110
structure length	110
Chain Sequence	VNSLSSPNSLFTGHSLEVGPSYRLIMQGDCNFVLYDSGKPVWASNTGGLGSGCRLTLHNNGNLVIYDQSNRVIWQTKTNGKEDHYVLVLQQDRNVVIYGPVVWATGSGPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 110 atoms

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110 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Crystal structures of a novel anti-HIV mannose-binding lectin from Polygonatum cyrtonema Hua with unique ligand-binding property and super-structure pubmed doi rcsb
molecule keywords	Mannose/sialic acid-binding lectin
total genus	24
structure length	110
sequence length	110
ec nomenclature
pdb deposition date	2009-03-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	3a0dA00

1MSAA 5T20B 3R0EA 3MEZA 2D04B 3A0EA 5J76A 4GC2A 3M7HA 5D5GA 5T1XB 1JPCA 1XD5A 4H3OA 3R0EB 1NIVA 3DZWA 5D9ZA 3A0DA 3MEZB 5J76B 1NPLA 5T20A 1BWUQ 1BWUA 5D5GB 1KJ1A 1B2PA 1DLPA 4PDTA 1BWUD 3A0CA 2D04A 1KJ1D 1BWUP 2DPFA 4TKCA 4GC1A 5T1XA 3M7JA 5D9ZB 1XD6A
chains in the Genus database with same CATH superfamily

1MSAA 5T20B 3R0EA 4OITA 3MEZA 2D04B 3A0EA 4OKCA 5J76A 4LE7A 4GC2A 3M7HA 5D5GA 5T1XB 1JPCA 4LEDA 1XD5A 4H3OA 3R0EB 1NIVA 3DZWA 5D9ZA 3A0DA 3MEZB 5J76B 1NPLA 4OIZA 5T20A 1BWUQ 1BWUA 5D5GB 1KJ1A 1B2PA 1DLPA 4PDTA 1BWUD 3A0CA 2D04A 1KJ1D 1BWUP 2DPFA 4LEAA 4GC1A 4TKCA 5T1XA 3M7JA 5D9ZB 1XD6A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1MSA A;  5T20 B;  3R0E A;  3MEZ A;  2D04 B;  3A0E A;  5J76 A;  4GC2 A;  3M7H A;  5D5G A;  5T1X B;  1JPC A;  1XD5 A;  4H3O A;  3R0E B;  1NIV A;  3DZW A;  5D9Z A;  3A0D A;  3MEZ B;  5J76 B;  1NPL A;  5T20 A;  1BWU Q;  1BWU A;  5D5G B;  1KJ1 A;  1B2P A;  1DLP A;  4PDT A;  1BWU D;  3A0C A;  2D04 A;  1KJ1 D;  1BWU P;  2DPF A;  4TKC A;  4GC1 A;  5T1X A;  3M7J A;  5D9Z B;  1XD6 A; 
#chains in the Genus database with same CATH topology
 1MSA A;  5T20 B;  3R0E A;  4OIT A;  3MEZ A;  2D04 B;  3A0E A;  4OKC A;  5J76 A;  4LE7 A;  4GC2 A;  3M7H A;  5D5G A;  5T1X B;  1JPC A;  4LED A;  1XD5 A;  4H3O A;  3R0E B;  1NIV A;  3DZW A;  5D9Z A;  3A0D A;  3MEZ B;  5J76 B;  1NPL A;  4OIZ A;  5T20 A;  1BWU Q;  1BWU A;  5D5G B;  1KJ1 A;  1B2P A;  1DLP A;  4PDT A;  1BWU D;  3A0C A;  2D04 A;  1KJ1 D;  1BWU P;  2DPF A;  4LEA A;  4GC1 A;  4TKC A;  5T1X A;  3M7J A;  5D9Z B;  1XD6 A; 
#chains in the Genus database with same CATH homology
 1MSA A;  5T20 B;  3R0E A;  3MEZ A;  2D04 B;  3A0E A;  5J76 A;  4GC2 A;  3M7H A;  5D5G A;  5T1X B;  1JPC A;  1XD5 A;  4H3O A;  3R0E B;  1NIV A;  3DZW A;  5D9Z A;  3A0D A;  3MEZ B;  5J76 B;  1NPL A;  5T20 A;  1BWU Q;  1BWU A;  5D5G B;  1KJ1 A;  1B2P A;  1DLP A;  4PDT A;  1BWU D;  3A0C A;  2D04 A;  1KJ1 D;  1BWU P;  2DPF A;  4TKC A;  4GC1 A;  5T1X A;  3M7J A;  5D9Z B;  1XD6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3A0DA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN