3ABKL

Bovine heart cytochrome c oxidase at the no-bound fully reduced state (50k)
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
46
structure length
46
Chain Sequence
HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title X-ray structure of the NO-bound Cu(B) in bovine cytochrome c oxidase
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
total genus 14
structure length 46
sequence length 46
chains with identical sequence Y
ec nomenclature
pdb deposition date 2009-12-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.49.10 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome c oxidase subunit VIIc 3abkL00
5IY5L 3AG4L 1OCCL 1V54L 3ABLL 3AG3L 3WG7L 5B3SL 2OCCL 2ZXWL 2DYRL 2EIML 2EIKL 1OCOL 3AG1L 3ASNL 2EIJL 3X2QL 5B1AL 1OCZL 1V55L 2DYSL 3AG2L 3ABML 3ASOL 3ABKL 2Y69L 2EILL 2EINL 5B1BL 1OCRL
chains in the Genus database with same CATH superfamily
5IY5L 3AG4L 1OCCL 1V54L 3ABLL 3AG3L 3WG7L 5B3SL 2OCCL 2ZXWL 2DYRL 2EIML 2EIKL 1OCOL 3AG1L 3ASNL 2EIJL 3X2QL 5B1AL 1OCZL 1V55L 2DYSL 3AG2L 3ABML 3ASOL 3ABKL 2Y69L 2EILL 2EINL 5B1BL 1OCRL
chains in the Genus database with same CATH topology
5IY5L 3AG4L 1OCCL 1V54L 3ABLL 3AG3L 3WG7L 5B3SL 2OCCL 2ZXWL 2DYRL 2EIML 2EIKL 1OCOL 3AG1L 3ASNL 2EIJL 3X2QL 5B1AL 1OCZL 1V55L 2DYSL 3AG2L 3ABML 3ASOL 3ABKL 2Y69L 2EILL 2EINL 5B1BL 1OCRL
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5IY5 L;  3AG4 L;  1OCC L;  1V54 L;  3ABL L;  3AG3 L;  3WG7 L;  5B3S L;  2OCC L;  2ZXW L;  2DYR L;  2EIM L;  2EIK L;  1OCO L;  3AG1 L;  3ASN L;  2EIJ L;  3X2Q L;  5B1A L;  1OCZ L;  1V55 L;  2DYS L;  3AG2 L;  3ABM L;  3ASO L;  3ABK L;  2Y69 L;  2EIL L;  2EIN L;  5B1B L;  1OCR L; 
#chains in the Genus database with same CATH topology
 5IY5 L;  3AG4 L;  1OCC L;  1V54 L;  3ABL L;  3AG3 L;  3WG7 L;  5B3S L;  2OCC L;  2ZXW L;  2DYR L;  2EIM L;  2EIK L;  1OCO L;  3AG1 L;  3ASN L;  2EIJ L;  3X2Q L;  5B1A L;  1OCZ L;  1V55 L;  2DYS L;  3AG2 L;  3ABM L;  3ASO L;  3ABK L;  2Y69 L;  2EIL L;  2EIN L;  5B1B L;  1OCR L; 
#chains in the Genus database with same CATH homology
 5IY5 L;  3AG4 L;  1OCC L;  1V54 L;  3ABL L;  3AG3 L;  3WG7 L;  5B3S L;  2OCC L;  2ZXW L;  2DYR L;  2EIM L;  2EIK L;  1OCO L;  3AG1 L;  3ASN L;  2EIJ L;  3X2Q L;  5B1A L;  1OCZ L;  1V55 L;  2DYS L;  3AG2 L;  3ABM L;  3ASO L;  3ABK L;  2Y69 L;  2EIL L;  2EIN L;  5B1B L;  1OCR L;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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