3ABLG

Bovine heart cytochrome c oxidase at the fully oxidized state (15-s x-ray exposure dataset)
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
84
structure length
83
Chain Sequence
ASAAKGDHGGGARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
total genus 14
structure length 83
sequence length 84
chains with identical sequence T
ec nomenclature
pdb deposition date 2009-12-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.95.10 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain G Cytochrome c oxidase, subunit VIa 3ablG00
1OCRG 1OCCG 2DYRG 3ASOG 3X2QG 5B3SG 2ZXWG 3ABKG 5IY5G 2DYSG 1V54G 3AG3G 3ABMG 3WG7G 2EING 2EIMG 3AG4G 1OCOG 2EILG 2EIJG 2EIKG 1OCZG 5B1AG 5B1BG 3ASNG 3AG1G 2OCCG 1V55G 3AG2G 3ABLG 2Y69G
chains in the Genus database with same CATH superfamily
1OCRG 1OCCG 2DYRG 3ASOG 3X2QG 5B3SG 2ZXWG 3ABKG 5IY5G 2DYSG 1V54G 3AG3G 3ABMG 3WG7G 2EING 2EIMG 3AG4G 1OCOG 2EILG 2EIJG 2EIKG 1OCZG 5B1AG 5B1BG 3ASNG 3AG1G 2OCCG 1V55G 3AG2G 3ABLG 2Y69G
chains in the Genus database with same CATH topology
1OCRG 1OCCG 2DYRG 3ASOG 3X2QG 5B3SG 2ZXWG 3ABKG 5IY5G 2DYSG 1V54G 3AG3G 3ABMG 3WG7G 2EING 2EIMG 3AG4G 1OCOG 2EILG 2EIJG 2EIKG 1OCZG 5B1AG 5B1BG 3ASNG 3AG1G 2OCCG 1V55G 3AG2G 3ABLG 2Y69G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OCR G;  1OCC G;  2DYR G;  3ASO G;  3X2Q G;  5B3S G;  2ZXW G;  3ABK G;  5IY5 G;  2DYS G;  1V54 G;  3AG3 G;  3ABM G;  3WG7 G;  2EIN G;  2EIM G;  3AG4 G;  1OCO G;  2EIL G;  2EIJ G;  2EIK G;  1OCZ G;  5B1A G;  5B1B G;  3ASN G;  3AG1 G;  2OCC G;  1V55 G;  3AG2 G;  3ABL G;  2Y69 G; 
#chains in the Genus database with same CATH topology
 1OCR G;  1OCC G;  2DYR G;  3ASO G;  3X2Q G;  5B3S G;  2ZXW G;  3ABK G;  5IY5 G;  2DYS G;  1V54 G;  3AG3 G;  3ABM G;  3WG7 G;  2EIN G;  2EIM G;  3AG4 G;  1OCO G;  2EIL G;  2EIJ G;  2EIK G;  1OCZ G;  5B1A G;  5B1B G;  3ASN G;  3AG1 G;  2OCC G;  1V55 G;  3AG2 G;  3ABL G;  2Y69 G; 
#chains in the Genus database with same CATH homology
 1OCR G;  1OCC G;  2DYR G;  3ASO G;  3X2Q G;  5B3S G;  2ZXW G;  3ABK G;  5IY5 G;  2DYS G;  1V54 G;  3AG3 G;  3ABM G;  3WG7 G;  2EIN G;  2EIM G;  3AG4 G;  1OCO G;  2EIL G;  2EIJ G;  2EIK G;  1OCZ G;  5B1A G;  5B1B G;  3ASN G;  3AG1 G;  2OCC G;  1V55 G;  3AG2 G;  3ABL G;  2Y69 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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