3AG2M

Bovine heart cytochrome c oxidase in the carbon monoxide-bound fully reduced state at 100 k
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
43
structure length
43
Chain Sequence
ITAKPAKTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
total genus 12
structure length 43
sequence length 43
chains with identical sequence Z
ec nomenclature
pdb deposition date 2010-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF02285 COX8 Cytochrome oxidase c subunit VIII
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.81.10 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain M Cytochrome c oxidase, subunit 8 3ag2M00
2OCCM 3AG2M 3X2QM 1OCOM 3AG4M 1OCRM 1V55M 3ASOM 2EIKM 5IY5M 3ABMM 1V54M 3ASNM 2ZXWM 5B1AM 3ABKM 3WG7M 5B1BM 1OCCM 2EINM 2DYRM 3ABLM 2DYSM 2EIMM 3AG1M 2EILM 5B3SM 2Y69M 2EIJM 1OCZM 3AG3M
chains in the Genus database with same CATH superfamily
2OCCM 3AG2M 3X2QM 1OCOM 3AG4M 1JO6A 1OCRM 1V55M 3ASOM 2EIKM 5IY5M 3ABMM 1V54M 3ASNM 2ZXWM 5B1AM 3ABKM 3WG7M 5B1BM 1OCCM 2EINM 2DYRM 3ABLM 2DYSM 2EIMM 3AG1M 2EILM 5B3SM 2Y69M 2EIJM 1OCZM 3AG3M
chains in the Genus database with same CATH topology
2OCCM 3AG2M 3X2QM 1OCOM 3AG4M 1OCRM 1V55M 3ASOM 2EIKM 5IY5M 3ABMM 1V54M 3ASNM 2ZXWM 5B1AM 3ABKM 3WG7M 5B1BM 1OCCM 2EINM 2DYRM 3ABLM 2DYSM 2EIMM 3AG1M 2EILM 5B3SM 2Y69M 2EIJM 1OCZM 3AG3M
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OCC M;  3AG2 M;  3X2Q M;  1OCO M;  3AG4 M;  1OCR M;  1V55 M;  3ASO M;  2EIK M;  5IY5 M;  3ABM M;  1V54 M;  3ASN M;  2ZXW M;  5B1A M;  3ABK M;  3WG7 M;  5B1B M;  1OCC M;  2EIN M;  2DYR M;  3ABL M;  2DYS M;  2EIM M;  3AG1 M;  2EIL M;  5B3S M;  2Y69 M;  2EIJ M;  1OCZ M;  3AG3 M; 
#chains in the Genus database with same CATH topology
 2OCC M;  3AG2 M;  3X2Q M;  1OCO M;  3AG4 M;  1JO6 A;  1OCR M;  1V55 M;  3ASO M;  2EIK M;  5IY5 M;  3ABM M;  1V54 M;  3ASN M;  2ZXW M;  5B1A M;  3ABK M;  3WG7 M;  5B1B M;  1OCC M;  2EIN M;  2DYR M;  3ABL M;  2DYS M;  2EIM M;  3AG1 M;  2EIL M;  5B3S M;  2Y69 M;  2EIJ M;  1OCZ M;  3AG3 M; 
#chains in the Genus database with same CATH homology
 2OCC M;  3AG2 M;  3X2Q M;  1OCO M;  3AG4 M;  1OCR M;  1V55 M;  3ASO M;  2EIK M;  5IY5 M;  3ABM M;  1V54 M;  3ASN M;  2ZXW M;  5B1A M;  3ABK M;  3WG7 M;  5B1B M;  1OCC M;  2EIN M;  2DYR M;  3ABL M;  2DYS M;  2EIM M;  3AG1 M;  2EIL M;  5B3S M;  2Y69 M;  2EIJ M;  1OCZ M;  3AG3 M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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