3CC4 | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	194
structure length	194
Chain Sequence	ARSAYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGKG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 194 atoms

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194 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. pubmed doi rcsb
molecule keywords	50S ribosomal protein L2P
total genus	57
structure length	194
sequence length	194
ec nomenclature
pdb deposition date	2008-02-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
M	PF00827	Ribosomal_L15e	Ribosomal L15

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1120.10	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal protein L15e	Ribosomal protein l15e	3cc4M00

1VQ7M 1Q86N 1VQ8M 1VQPM 3CMAM 1VQOM 1KQSL 3CCVM 1W2BL 1YITM 3CMEM 1VQMM 3CCLM 3CCMM 2QEXM 3CCJM 1YJWM 1QVGL 1K8AN 1K9MN 1YHQM 1VQNM 3CXCL 1NJIN 1VQ4M 1KD1N 1VQKM 3CCEM 3G4SM 1VQLM 1YIJM 3CCUM 3CCQM 1M90N 2OTJM 3G6EM 3CC4M 1YJNM 3CC7M 1VQ5M 1Q81N 1QVFL 1YJ9M 1VQ6M 3CPWL 1Q7YN 2QA4M 2OTLM 3OW2L 1K73N 3CCSM 3CD6M 3CC2M 1VQ9M 1N8RN 1S72M 3I56M 3G71M 3CCRM 1Q82N 1YI2M 1M1KN 1JJ2L 3I55M 1KC8N
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1VQ7 M;  1Q86 N;  1VQ8 M;  1VQP M;  3CMA M;  1VQO M;  1KQS L;  3CCV M;  1W2B L;  1YIT M;  3CME M;  1VQM M;  3CCL M;  3CCM M;  2QEX M;  3CCJ M;  1YJW M;  1QVG L;  1K8A N;  1K9M N;  1YHQ M;  1VQN M;  3CXC L;  1NJI N;  1VQ4 M;  1KD1 N;  1VQK M;  3CCE M;  3G4S M;  1VQL M;  1YIJ M;  3CCU M;  3CCQ M;  1M90 N;  2OTJ M;  3G6E M;  3CC4 M;  1YJN M;  3CC7 M;  1VQ5 M;  1Q81 N;  1QVF L;  1YJ9 M;  1VQ6 M;  3CPW L;  1Q7Y N;  2QA4 M;  2OTL M;  3OW2 L;  1K73 N;  3CCS M;  3CD6 M;  3CC2 M;  1VQ9 M;  1N8R N;  1S72 M;  3I56 M;  3G71 M;  3CCR M;  1Q82 N;  1YI2 M;  1M1K N;  1JJ2 L;  3I55 M;  1KC8 N; 
#chains in the Genus database with same CATH topology
 1VQ7 M;  1Q86 N;  1VQ8 M;  1VQP M;  3CMA M;  1VQO M;  1KQS L;  3CCV M;  1W2B L;  1YIT M;  3CME M;  1VQM M;  3CCL M;  3CCM M;  2QEX M;  3CCJ M;  1YJW M;  1QVG L;  1K8A N;  1K9M N;  1YHQ M;  1VQN M;  3CXC L;  1NJI N;  1VQ4 M;  1KD1 N;  1VQK M;  3CCE M;  3G4S M;  1VQL M;  1YIJ M;  3CCU M;  3CCQ M;  1M90 N;  2OTJ M;  3G6E M;  3CC4 M;  1YJN M;  3CC7 M;  1VQ5 M;  1Q81 N;  1QVF L;  1YJ9 M;  1VQ6 M;  3CPW L;  1Q7Y N;  2QA4 M;  2OTL M;  3OW2 L;  1K73 N;  3CCS M;  3CD6 M;  3CC2 M;  1VQ9 M;  1N8R N;  1S72 M;  3I56 M;  3G71 M;  3CCR M;  1Q82 N;  1YI2 M;  1M1K N;  1JJ2 L;  3I55 M;  1KC8 N; 
#chains in the Genus database with same CATH homology
 1VQ7 M;  1Q86 N;  1VQ8 M;  1VQP M;  3CMA M;  1VQO M;  1KQS L;  3CCV M;  1W2B L;  1YIT M;  3CME M;  1VQM M;  3CCL M;  3CCM M;  2QEX M;  3CCJ M;  1YJW M;  1QVG L;  1K8A N;  1K9M N;  1YHQ M;  1VQN M;  3CXC L;  1NJI N;  1VQ4 M;  1KD1 N;  1VQK M;  3CCE M;  3G4S M;  1VQL M;  1YIJ M;  3CCU M;  3CCQ M;  1M90 N;  2OTJ M;  3G6E M;  3CC4 M;  1YJN M;  3CC7 M;  1VQ5 M;  1Q81 N;  1QVF L;  1YJ9 M;  1VQ6 M;  3CPW L;  1Q7Y N;  2QA4 M;  2OTL M;  3OW2 L;  1K73 N;  3CCS M;  3CD6 M;  3CC2 M;  1VQ9 M;  1N8R N;  1S72 M;  3I56 M;  3G71 M;  3CCR M;  1Q82 N;  1YI2 M;  1M1K N;  1JJ2 L;  3I55 M;  1KC8 N;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3CC4M

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations