3CD6 | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	246
structure length	246
Chain Sequence	MQATIYDLDGNTDGEVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKQDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAER

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. pubmed doi rcsb
molecule keywords	50S ribosomal protein L2P
total genus	56
structure length	246
sequence length	246
ec nomenclature
pdb deposition date	2008-02-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF00573	Ribosomal_L4	Ribosomal protein L4/L1 family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1370.10	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L4; Chain: A;	Ribosomal Protein L4; Chain: A;	3cd6C00

1VQ8C 3CD6C 3CXCC 3OW2C 1VQLC 1W2BC 3J7YF 1YIJC 1KD1E 3CCLC 3G4SC 3CCJC 3CCMC 3CCUC 1Q7YE 1M90E 3CCSC 1Q86E 1VQKC 3CCRC 1VQNC 1N8RE 1K9ME 1K8AE 4V19F 3CCVC 3CMEC 3CCEC 1VQ5C 3CMAC 1M1KE 2OTJC 3CC4C 5DM7C 1VQOC 1VQ9C 1YHQC 2OTLC 1YJ9C 1VQ6C 3CCQC 3CC2C 1YJNC 1DMGA 3CC7C 3G6EC 1S72C 1NJIE 1VQ7C 1KC8E 1VQPC 1K73E 1Q81E 3I56C 1YI2C 1KQSC 1VQ4C 3G71C 1YJWC 1JJ2C 3CPWC 1YITC 2QEXC 1VQMC 1Q82E 2QA4C 1QVGC 1QVFC 3I55C
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1VQ8 C;  3CD6 C;  3CXC C;  3OW2 C;  1VQL C;  1W2B C;  3J7Y F;  1YIJ C;  1KD1 E;  3CCL C;  3G4S C;  3CCJ C;  3CCM C;  3CCU C;  1Q7Y E;  1M90 E;  3CCS C;  1Q86 E;  1VQK C;  3CCR C;  1VQN C;  1N8R E;  1K9M E;  1K8A E;  4V19 F;  3CCV C;  3CME C;  3CCE C;  1VQ5 C;  3CMA C;  1M1K E;  2OTJ C;  3CC4 C;  5DM7 C;  1VQO C;  1VQ9 C;  1YHQ C;  2OTL C;  1YJ9 C;  1VQ6 C;  3CCQ C;  3CC2 C;  1YJN C;  1DMG A;  3CC7 C;  3G6E C;  1S72 C;  1NJI E;  1VQ7 C;  1KC8 E;  1VQP C;  1K73 E;  1Q81 E;  3I56 C;  1YI2 C;  1KQS C;  1VQ4 C;  3G71 C;  1YJW C;  1JJ2 C;  3CPW C;  1YIT C;  2QEX C;  1VQM C;  1Q82 E;  2QA4 C;  1QVG C;  1QVF C;  3I55 C; 
#chains in the Genus database with same CATH topology
 1VQ8 C;  3CD6 C;  3CXC C;  3OW2 C;  1VQL C;  1W2B C;  3J7Y F;  1YIJ C;  1KD1 E;  3CCL C;  3G4S C;  3CCJ C;  3CCM C;  3CCU C;  1Q7Y E;  1M90 E;  3CCS C;  1Q86 E;  1VQK C;  3CCR C;  1VQN C;  1N8R E;  1K9M E;  1K8A E;  4V19 F;  3CCV C;  3CME C;  3CCE C;  1VQ5 C;  3CMA C;  1M1K E;  2OTJ C;  3CC4 C;  5DM7 C;  1VQO C;  1VQ9 C;  1YHQ C;  2OTL C;  1YJ9 C;  1VQ6 C;  3CCQ C;  3CC2 C;  1YJN C;  1DMG A;  3CC7 C;  3G6E C;  1S72 C;  1NJI E;  1VQ7 C;  1KC8 E;  1VQP C;  1K73 E;  1Q81 E;  3I56 C;  1YI2 C;  1KQS C;  1VQ4 C;  3G71 C;  1YJW C;  1JJ2 C;  3CPW C;  1YIT C;  2QEX C;  1VQM C;  1Q82 E;  2QA4 C;  1QVG C;  1QVF C;  3I55 C; 
#chains in the Genus database with same CATH homology
 1VQ8 C;  3CD6 C;  3CXC C;  3OW2 C;  1VQL C;  1W2B C;  3J7Y F;  1YIJ C;  1KD1 E;  3CCL C;  3G4S C;  3CCJ C;  3CCM C;  3CCU C;  1Q7Y E;  1M90 E;  3CCS C;  1Q86 E;  1VQK C;  3CCR C;  1VQN C;  1N8R E;  1K9M E;  1K8A E;  4V19 F;  3CCV C;  3CME C;  3CCE C;  1VQ5 C;  3CMA C;  1M1K E;  2OTJ C;  3CC4 C;  5DM7 C;  1VQO C;  1VQ9 C;  1YHQ C;  2OTL C;  1YJ9 C;  1VQ6 C;  3CCQ C;  3CC2 C;  1YJN C;  1DMG A;  3CC7 C;  3G6E C;  1S72 C;  1NJI E;  1VQ7 C;  1KC8 E;  1VQP C;  1K73 E;  1Q81 E;  3I56 C;  1YI2 C;  1KQS C;  1VQ4 C;  3G71 C;  1YJW C;  1JJ2 C;  3CPW C;  1YIT C;  2QEX C;  1VQM C;  1Q82 E;  2QA4 C;  1QVG C;  1QVF C;  3I55 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3CD6C

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations