3DTAH

E(l212)q, n(m44)d double mutant structure of photosynthetic reaction center from rhodobacter sphaeroides
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
240
structure length
240
Chain Sequence
DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Restoring proton transfer in L212Q mutant of photosynthetic reaction center
rcsb
molecule tags Photosynthesis
source organism Rhodobacter sphaeroides
molecule keywords Reaction center protein L chain
total genus 54
structure length 240
sequence length 240
ec nomenclature
pdb deposition date 2008-07-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region
H PF05239 PRC PRC-barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2 3dtaH02
4.10.540.10 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic reaction centre, H subunit, N-terminal domain 3dtaH01
1L9BH 1E6DH 2BOZH 1YSTH 1R2CH 2WJNH 7PRCH 1PCRH 1AIJH 5PRCH 1AIGH 1JGYH 4HBHH 1RGNH 2I5NH 1K6LH 2UWSH 1OGVH 2HJ6H 3DTSH 1YF6H 4N7KH 2HH1H 2X5VH 2HG9H 3T6EH 2HITH 1E14H 3WMMH 3G7FH 1RZZH 2UWWH 2UX4H 2UXJH 1PSTH 4IN5H 2UXKH 1EYSH 2JIYH 1JGZH 2UX3H 1S00H 1DS8H 3DSYH 3D38H 1JGWH 3T6DH 5LSEH 4LWYH 2BNPC 5LRIH 3DU2H 2UXLH 2WX5H 4IN6H 1RQKH 1RY5H 1JH0H 2UWVH 6PRCH 1DV3H 1FNQH 2GMRH 4RCRH 1RG5H 2WJMH 1PSSH 2UXMH 3ZUMH 2X5UH 1K6NH 3I4DH 1JGXH 2UWTH 3PRCH 3DUQH 3DTRH 1UMXH 1MPSH 2JJ0H 4N7LH 3V3YH 3ZUWH 1RZHH 2PRCH 3DU3H 4CASD 1M3XH 1DXRH 2J8CH 2UX5H 4HBJH 2UWUH 2BNSC 4H99H 2HG3H 2HHKH 1QOVH 2GNUH 1PRCH 1F6NH 1DV6H 1FNPH 3DTAH 2JBLH 4H9LH 1KBYH 3V3ZH 4IN7H 1L9JH 4TQQH 2RCRH 1RVJH 1VRNH 2J8DH
chains in the Genus database with same CATH superfamily
1L9BH 1E6DH 2BOZH 1YSTH 1R2CH 2WJNH 7PRCH 1PCRH 1AIJH 5PRCH 1AIGH 1JGYH 4HBHH 1RGNH 2I5NH 1K6LH 2UWSH 1OGVH 2HJ6H 3DTSH 1YF6H 4N7KH 2HH1H 2X5VH 2HG9H 3T6EH 2HITH 1E14H 3WMMH 3G7FH 1RZZH 2UWWH 2UX4H 2UXJH 1PSTH 4IN5H 2UXKH 1EYSH 2JIYH 1JGZH 2UX3H 1S00H 1DS8H 3DSYH 3D38H 1JGWH 3T6DH 5LSEH 4LWYH 2BNPC 5LRIH 3DU2H 2UXLH 2WX5H 4IN6H 1RQKH 1RY5H 1JH0H 2UWVH 6PRCH 1DV3H 1FNQH 2GMRH 4RCRH 1RG5H 2WJMH 1PSSH 2UXMH 3ZUMH 2X5UH 1K6NH 3I4DH 1JGXH 2UWTH 3PRCH 3DUQH 3DTRH 1UMXH 1MPSH 2JJ0H 4N7LH 3V3YH 3ZUWH 1RZHH 2PRCH 3DU3H 4CASD 1M3XH 1DXRH 2J8CH 2UX5H 4HBJH 2UWUH 2BNSC 4H99H 2HG3H 2HHKH 1QOVH 2GNUH 1PRCH 1F6NH 1DV6H 1FNPH 3DTAH 2JBLH 4H9LH 1KBYH 3V3ZH 4IN7H 1L9JH 4TQQH 2RCRH 1RVJH 1VRNH 2J8DH
chains in the Genus database with same CATH topology
1L9BH 1E6DH 2BOZH 1YSTH 1R2CH 2WJNH 7PRCH 1PCRH 1AIJH 5PRCH 1AIGH 1JGYH 4HBHH 1RGNH 2I5NH 1K6LH 2UWSH 1OGVH 2HJ6H 3DTSH 1YF6H 4N7KH 2HH1H 2X5VH 2HG9H 3T6EH 2HITH 1E14H 3WMMH 3G7FH 1RZZH 2UWWH 2UX4H 2UXJH 1PSTH 4IN5H 2UXKH 1EYSH 2JIYH 1JGZH 2UX3H 1S00H 1DS8H 3DSYH 3D38H 1JGWH 3T6DH 5LSEH 4LWYH 2BNPC 5LRIH 3DU2H 2UXLH 2WX5H 4IN6H 1RQKH 1RY5H 1JH0H 2UWVH 6PRCH 1DV3H 1FNQH 2GMRH 4RCRH 1RG5H 2WJMH 1PSSH 2UXMH 3ZUMH 2X5UH 1K6NH 3I4DH 1JGXH 2UWTH 3PRCH 3DUQH 3DTRH 1UMXH 1MPSH 2JJ0H 4N7LH 3V3YH 3ZUWH 1RZHH 2PRCH 3DU3H 4CASD 1M3XH 1DXRH 2J8CH 2UX5H 4HBJH 2UWUH 2BNSC 4H99H 2HG3H 2HHKH 1QOVH 2GNUH 1PRCH 1F6NH 1DV6H 1FNPH 3DTAH 2JBLH 4H9LH 1KBYH 3V3ZH 4IN7H 1L9JH 4TQQH 2RCRH 1RVJH 1VRNH 2J8DH
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1L9B H;  1E6D H;  2BOZ H;  1YST H;  1R2C H;  2WJN H;  7PRC H;  1PCR H;  1AIJ H;  5PRC H;  1AIG H;  1JGY H;  4HBH H;  1RGN H;  2I5N H;  1K6L H;  2UWS H;  1OGV H;  2HJ6 H;  3DTS H;  1YF6 H;  4N7K H;  2HH1 H;  2X5V H;  2HG9 H;  3T6E H;  2HIT H;  1E14 H;  3WMM H;  3G7F H;  1RZZ H;  2UWW H;  2UX4 H;  2UXJ H;  1PST H;  4IN5 H;  2UXK H;  1EYS H;  2JIY H;  1JGZ H;  2UX3 H;  1S00 H;  1DS8 H;  3DSY H;  3D38 H;  1JGW H;  3T6D H;  5LSE H;  4LWY H;  2BNP C;  5LRI H;  3DU2 H;  2UXL H;  2WX5 H;  4IN6 H;  1RQK H;  1RY5 H;  1JH0 H;  2UWV H;  6PRC H;  1DV3 H;  1FNQ H;  2GMR H;  4RCR H;  1RG5 H;  2WJM H;  1PSS H;  2UXM H;  3ZUM H;  2X5U H;  1K6N H;  3I4D H;  1JGX H;  2UWT H;  3PRC H;  3DUQ H;  3DTR H;  1UMX H;  1MPS H;  2JJ0 H;  4N7L H;  3V3Y H;  3ZUW H;  1RZH H;  2PRC H;  3DU3 H;  4CAS D;  1M3X H;  1DXR H;  2J8C H;  2UX5 H;  4HBJ H;  2UWU H;  2BNS C;  4H99 H;  2HG3 H;  2HHK H;  1QOV H;  2GNU H;  1PRC H;  1F6N H;  1DV6 H;  1FNP H;  3DTA H;  2JBL H;  4H9L H;  1KBY H;  3V3Z H;  4IN7 H;  1L9J H;  4TQQ H;  2RCR H;  1RVJ H;  1VRN H;  2J8D H; 
#chains in the Genus database with same CATH topology
 1L9B H;  1E6D H;  2BOZ H;  1YST H;  1R2C H;  2WJN H;  7PRC H;  1PCR H;  1AIJ H;  5PRC H;  1AIG H;  1JGY H;  4HBH H;  1RGN H;  2I5N H;  1K6L H;  2UWS H;  1OGV H;  2HJ6 H;  3DTS H;  1YF6 H;  4N7K H;  2HH1 H;  2X5V H;  2HG9 H;  3T6E H;  2HIT H;  1E14 H;  3WMM H;  3G7F H;  1RZZ H;  2UWW H;  2UX4 H;  2UXJ H;  1PST H;  4IN5 H;  2UXK H;  1EYS H;  2JIY H;  1JGZ H;  2UX3 H;  1S00 H;  1DS8 H;  3DSY H;  3D38 H;  1JGW H;  3T6D H;  5LSE H;  4LWY H;  2BNP C;  5LRI H;  3DU2 H;  2UXL H;  2WX5 H;  4IN6 H;  1RQK H;  1RY5 H;  1JH0 H;  2UWV H;  6PRC H;  1DV3 H;  1FNQ H;  2GMR H;  4RCR H;  1RG5 H;  2WJM H;  1PSS H;  2UXM H;  3ZUM H;  2X5U H;  1K6N H;  3I4D H;  1JGX H;  2UWT H;  3PRC H;  3DUQ H;  3DTR H;  1UMX H;  1MPS H;  2JJ0 H;  4N7L H;  3V3Y H;  3ZUW H;  1RZH H;  2PRC H;  3DU3 H;  4CAS D;  1M3X H;  1DXR H;  2J8C H;  2UX5 H;  4HBJ H;  2UWU H;  2BNS C;  4H99 H;  2HG3 H;  2HHK H;  1QOV H;  2GNU H;  1PRC H;  1F6N H;  1DV6 H;  1FNP H;  3DTA H;  2JBL H;  4H9L H;  1KBY H;  3V3Z H;  4IN7 H;  1L9J H;  4TQQ H;  2RCR H;  1RVJ H;  1VRN H;  2J8D H; 
#chains in the Genus database with same CATH homology
 1L9B H;  1E6D H;  2BOZ H;  1YST H;  1R2C H;  2WJN H;  7PRC H;  1PCR H;  1AIJ H;  5PRC H;  1AIG H;  1JGY H;  4HBH H;  1RGN H;  2I5N H;  1K6L H;  2UWS H;  1OGV H;  2HJ6 H;  3DTS H;  1YF6 H;  4N7K H;  2HH1 H;  2X5V H;  2HG9 H;  3T6E H;  2HIT H;  1E14 H;  3WMM H;  3G7F H;  1RZZ H;  2UWW H;  2UX4 H;  2UXJ H;  1PST H;  4IN5 H;  2UXK H;  1EYS H;  2JIY H;  1JGZ H;  2UX3 H;  1S00 H;  1DS8 H;  3DSY H;  3D38 H;  1JGW H;  3T6D H;  5LSE H;  4LWY H;  2BNP C;  5LRI H;  3DU2 H;  2UXL H;  2WX5 H;  4IN6 H;  1RQK H;  1RY5 H;  1JH0 H;  2UWV H;  6PRC H;  1DV3 H;  1FNQ H;  2GMR H;  4RCR H;  1RG5 H;  2WJM H;  1PSS H;  2UXM H;  3ZUM H;  2X5U H;  1K6N H;  3I4D H;  1JGX H;  2UWT H;  3PRC H;  3DUQ H;  3DTR H;  1UMX H;  1MPS H;  2JJ0 H;  4N7L H;  3V3Y H;  3ZUW H;  1RZH H;  2PRC H;  3DU3 H;  4CAS D;  1M3X H;  1DXR H;  2J8C H;  2UX5 H;  4HBJ H;  2UWU H;  2BNS C;  4H99 H;  2HG3 H;  2HHK H;  1QOV H;  2GNU H;  1PRC H;  1F6N H;  1DV6 H;  1FNP H;  3DTA H;  2JBL H;  4H9L H;  1KBY H;  3V3Z H;  4IN7 H;  1L9J H;  4TQQ H;  2RCR H;  1RVJ H;  1VRN H;  2J8D H;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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