3DTRH

E(l212)q, l(l227)f double mutant structure of photosynthetic reaction center from rhodobacter sphaeroides
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
240
structure length
240
Chain Sequence
DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Restoring proton transfer in L212Q mutant of photosynthetic reaction center
rcsb
molecule tags Photosynthesis
source organism Rhodobacter sphaeroides
molecule keywords Reaction center protein L chain
total genus 55
structure length 240
sequence length 240
ec nomenclature
pdb deposition date 2008-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region
H PF05239 PRC PRC-barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2 3dtrH02
4.10.540.10 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic reaction centre, H subunit, N-terminal domain 3dtrH01
1RY5H 4IN7H 1E6DH 1K6LH 6PRCH 5LSEH 3T6EH 1MPSH 2WJMH 3V3ZH 1PRCH 1PSTH 3ZUWH 1QOVH 2GNUH 2UXLH 2UXMH 2JIYH 1DXRH 2UWVH 1EYSH 4H9LH 2BOZH 2UWSH 3DTAH 3T6DH 3PRCH 1YSTH 1L9JH 7PRCH 2BNPC 1JH0H 1L9BH 4IN5H 3WMMH 2UX5H 1VRNH 2HHKH 1FNPH 1M3XH 2X5UH 1K6NH 1JGZH 3DU3H 3ZUMH 1AIGH 1RG5H 4LWYH 2J8CH 1RZHH 2UXKH 1JGYH 2HG3H 2RCRH 1FNQH 5LRIH 4RCRH 3DU2H 1RGNH 4HBHH 2HG9H 1RQKH 2UX4H 1UMXH 1OGVH 3DUQH 1RVJH 3I4DH 2JBLH 2HITH 2UWWH 1PSSH 2PRCH 5PRCH 1JGXH 3DSYH 1DV6H 1DV3H 1DS8H 2GMRH 2WX5H 2HJ6H 3DTSH 1F6NH 3V3YH 2UXJH 2WJNH 2J8DH 2UWUH 1PCRH 2I5NH 1S00H 1AIJH 1YF6H 4CASD 2UWTH 1RZZH 4HBJH 2BNSC 3G7FH 1KBYH 4H99H 3D38H 2UX3H 4TQQH 1E14H 2HH1H 1JGWH 4N7LH 3DTRH 4N7KH 2X5VH 1R2CH 4IN6H 2JJ0H
chains in the Genus database with same CATH superfamily
1RY5H 4IN7H 1E6DH 1K6LH 6PRCH 5LSEH 3T6EH 1MPSH 2WJMH 3V3ZH 1PRCH 1PSTH 3ZUWH 1QOVH 2GNUH 2UXLH 2UXMH 2JIYH 1DXRH 2UWVH 1EYSH 4H9LH 2BOZH 2UWSH 3DTAH 3T6DH 3PRCH 1YSTH 1L9JH 7PRCH 2BNPC 1JH0H 1L9BH 4IN5H 3WMMH 2UX5H 1VRNH 2HHKH 1FNPH 1M3XH 2X5UH 1K6NH 1JGZH 3DU3H 3ZUMH 1AIGH 1RG5H 4LWYH 2J8CH 1RZHH 2UXKH 1JGYH 2HG3H 2RCRH 1FNQH 5LRIH 4RCRH 3DU2H 1RGNH 4HBHH 2HG9H 1RQKH 2UX4H 1UMXH 1OGVH 3DUQH 1RVJH 3I4DH 2JBLH 2HITH 2UWWH 1PSSH 2PRCH 5PRCH 1JGXH 3DSYH 1DV6H 1DV3H 1DS8H 2GMRH 2WX5H 2HJ6H 3DTSH 1F6NH 3V3YH 2UXJH 2WJNH 2J8DH 2UWUH 1PCRH 2I5NH 1S00H 1AIJH 1YF6H 4CASD 2UWTH 1RZZH 4HBJH 2BNSC 3G7FH 1KBYH 4H99H 3D38H 2UX3H 4TQQH 1E14H 2HH1H 1JGWH 4N7LH 3DTRH 4N7KH 2X5VH 1R2CH 4IN6H 2JJ0H
chains in the Genus database with same CATH topology
1RY5H 4IN7H 1E6DH 1K6LH 6PRCH 5LSEH 3T6EH 1MPSH 2WJMH 3V3ZH 1PRCH 1PSTH 3ZUWH 1QOVH 2GNUH 2UXLH 2UXMH 2JIYH 1DXRH 2UWVH 1EYSH 4H9LH 2BOZH 2UWSH 3DTAH 3T6DH 3PRCH 1YSTH 1L9JH 7PRCH 2BNPC 1JH0H 1L9BH 4IN5H 3WMMH 2UX5H 1VRNH 2HHKH 1FNPH 1M3XH 2X5UH 1K6NH 1JGZH 3DU3H 3ZUMH 1AIGH 1RG5H 4LWYH 2J8CH 1RZHH 2UXKH 1JGYH 2HG3H 2RCRH 1FNQH 5LRIH 4RCRH 3DU2H 1RGNH 4HBHH 2HG9H 1RQKH 2UX4H 1UMXH 1OGVH 3DUQH 1RVJH 3I4DH 2JBLH 2HITH 2UWWH 1PSSH 2PRCH 5PRCH 1JGXH 3DSYH 1DV6H 1DV3H 1DS8H 2GMRH 2WX5H 2HJ6H 3DTSH 1F6NH 3V3YH 2UXJH 2WJNH 2J8DH 2UWUH 1PCRH 2I5NH 1S00H 1AIJH 1YF6H 4CASD 2UWTH 1RZZH 4HBJH 2BNSC 3G7FH 1KBYH 4H99H 3D38H 2UX3H 4TQQH 1E14H 2HH1H 1JGWH 4N7LH 3DTRH 4N7KH 2X5VH 1R2CH 4IN6H 2JJ0H
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1RY5 H;  4IN7 H;  1E6D H;  1K6L H;  6PRC H;  5LSE H;  3T6E H;  1MPS H;  2WJM H;  3V3Z H;  1PRC H;  1PST H;  3ZUW H;  1QOV H;  2GNU H;  2UXL H;  2UXM H;  2JIY H;  1DXR H;  2UWV H;  1EYS H;  4H9L H;  2BOZ H;  2UWS H;  3DTA H;  3T6D H;  3PRC H;  1YST H;  1L9J H;  7PRC H;  2BNP C;  1JH0 H;  1L9B H;  4IN5 H;  3WMM H;  2UX5 H;  1VRN H;  2HHK H;  1FNP H;  1M3X H;  2X5U H;  1K6N H;  1JGZ H;  3DU3 H;  3ZUM H;  1AIG H;  1RG5 H;  4LWY H;  2J8C H;  1RZH H;  2UXK H;  1JGY H;  2HG3 H;  2RCR H;  1FNQ H;  5LRI H;  4RCR H;  3DU2 H;  1RGN H;  4HBH H;  2HG9 H;  1RQK H;  2UX4 H;  1UMX H;  1OGV H;  3DUQ H;  1RVJ H;  3I4D H;  2JBL H;  2HIT H;  2UWW H;  1PSS H;  2PRC H;  5PRC H;  1JGX H;  3DSY H;  1DV6 H;  1DV3 H;  1DS8 H;  2GMR H;  2WX5 H;  2HJ6 H;  3DTS H;  1F6N H;  3V3Y H;  2UXJ H;  2WJN H;  2J8D H;  2UWU H;  1PCR H;  2I5N H;  1S00 H;  1AIJ H;  1YF6 H;  4CAS D;  2UWT H;  1RZZ H;  4HBJ H;  2BNS C;  3G7F H;  1KBY H;  4H99 H;  3D38 H;  2UX3 H;  4TQQ H;  1E14 H;  2HH1 H;  1JGW H;  4N7L H;  3DTR H;  4N7K H;  2X5V H;  1R2C H;  4IN6 H;  2JJ0 H; 
#chains in the Genus database with same CATH topology
 1RY5 H;  4IN7 H;  1E6D H;  1K6L H;  6PRC H;  5LSE H;  3T6E H;  1MPS H;  2WJM H;  3V3Z H;  1PRC H;  1PST H;  3ZUW H;  1QOV H;  2GNU H;  2UXL H;  2UXM H;  2JIY H;  1DXR H;  2UWV H;  1EYS H;  4H9L H;  2BOZ H;  2UWS H;  3DTA H;  3T6D H;  3PRC H;  1YST H;  1L9J H;  7PRC H;  2BNP C;  1JH0 H;  1L9B H;  4IN5 H;  3WMM H;  2UX5 H;  1VRN H;  2HHK H;  1FNP H;  1M3X H;  2X5U H;  1K6N H;  1JGZ H;  3DU3 H;  3ZUM H;  1AIG H;  1RG5 H;  4LWY H;  2J8C H;  1RZH H;  2UXK H;  1JGY H;  2HG3 H;  2RCR H;  1FNQ H;  5LRI H;  4RCR H;  3DU2 H;  1RGN H;  4HBH H;  2HG9 H;  1RQK H;  2UX4 H;  1UMX H;  1OGV H;  3DUQ H;  1RVJ H;  3I4D H;  2JBL H;  2HIT H;  2UWW H;  1PSS H;  2PRC H;  5PRC H;  1JGX H;  3DSY H;  1DV6 H;  1DV3 H;  1DS8 H;  2GMR H;  2WX5 H;  2HJ6 H;  3DTS H;  1F6N H;  3V3Y H;  2UXJ H;  2WJN H;  2J8D H;  2UWU H;  1PCR H;  2I5N H;  1S00 H;  1AIJ H;  1YF6 H;  4CAS D;  2UWT H;  1RZZ H;  4HBJ H;  2BNS C;  3G7F H;  1KBY H;  4H99 H;  3D38 H;  2UX3 H;  4TQQ H;  1E14 H;  2HH1 H;  1JGW H;  4N7L H;  3DTR H;  4N7K H;  2X5V H;  1R2C H;  4IN6 H;  2JJ0 H; 
#chains in the Genus database with same CATH homology
 1RY5 H;  4IN7 H;  1E6D H;  1K6L H;  6PRC H;  5LSE H;  3T6E H;  1MPS H;  2WJM H;  3V3Z H;  1PRC H;  1PST H;  3ZUW H;  1QOV H;  2GNU H;  2UXL H;  2UXM H;  2JIY H;  1DXR H;  2UWV H;  1EYS H;  4H9L H;  2BOZ H;  2UWS H;  3DTA H;  3T6D H;  3PRC H;  1YST H;  1L9J H;  7PRC H;  2BNP C;  1JH0 H;  1L9B H;  4IN5 H;  3WMM H;  2UX5 H;  1VRN H;  2HHK H;  1FNP H;  1M3X H;  2X5U H;  1K6N H;  1JGZ H;  3DU3 H;  3ZUM H;  1AIG H;  1RG5 H;  4LWY H;  2J8C H;  1RZH H;  2UXK H;  1JGY H;  2HG3 H;  2RCR H;  1FNQ H;  5LRI H;  4RCR H;  3DU2 H;  1RGN H;  4HBH H;  2HG9 H;  1RQK H;  2UX4 H;  1UMX H;  1OGV H;  3DUQ H;  1RVJ H;  3I4D H;  2JBL H;  2HIT H;  2UWW H;  1PSS H;  2PRC H;  5PRC H;  1JGX H;  3DSY H;  1DV6 H;  1DV3 H;  1DS8 H;  2GMR H;  2WX5 H;  2HJ6 H;  3DTS H;  1F6N H;  3V3Y H;  2UXJ H;  2WJN H;  2J8D H;  2UWU H;  1PCR H;  2I5N H;  1S00 H;  1AIJ H;  1YF6 H;  4CAS D;  2UWT H;  1RZZ H;  4HBJ H;  2BNS C;  3G7F H;  1KBY H;  4H99 H;  3D38 H;  2UX3 H;  4TQQ H;  1E14 H;  2HH1 H;  1JGW H;  4N7L H;  3DTR H;  4N7K H;  2X5V H;  1R2C H;  4IN6 H;  2JJ0 H;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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