3DTSH

E(l212)a, d(l213)a, r(m233)l triple mutant structure of photosynthetic reaction center from rhodobacter sphaeroides
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
240
structure length
240
Chain Sequence
DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural description of compensatory mutations that restore proton transfer pathways to the L212-L213A mutant bacterial reaction center
rcsb
molecule tags Photosynthesis
source organism Rhodobacter sphaeroides
molecule keywords Reaction center protein L chain
total genus 54
structure length 240
sequence length 240
ec nomenclature
pdb deposition date 2008-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region
H PF05239 PRC PRC-barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2 3dtsH02
4.10.540.10 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic reaction centre, H subunit, N-terminal domain 3dtsH01
2UX4H 2JBLH 6PRCH 1JGYH 4IN5H 1E6DH 1E14H 1PCRH 3I4DH 1K6LH 2GNUH 1JGXH 4HBJH 3DTSH 1FNQH 2BNPC 2HH1H 3DTAH 1RVJH 4TQQH 2GMRH 1L9JH 2UXMH 1F6NH 1RGNH 3WMMH 1JGZH 1OGVH 1DS8H 3V3ZH 3D38H 3DUQH 1JH0H 2JJ0H 5PRCH 1R2CH 1PRCH 4LWYH 1JGWH 2UX3H 3T6EH 2WJNH 1PSSH 1L9BH 4H99H 2HG9H 2HJ6H 2I5NH 2UWSH 1YF6H 2WX5H 4N7LH 4RCRH 4HBHH 3ZUWH 2X5UH 3DSYH 1YSTH 3V3YH 3DTRH 2UWTH 4N7KH 3PRCH 1KBYH 1FNPH 3ZUMH 3G7FH 2UWVH 3DU2H 2J8DH 5LRIH 2J8CH 2UX5H 1UMXH 1K6NH 4IN7H 3DU3H 2UXLH 4H9LH 2BOZH 2PRCH 2UWUH 1M3XH 1S00H 1RZZH 2WJMH 2HHKH 2JIYH 2HITH 2HG3H 4CASD 2X5VH 1EYSH 1DV3H 2UXKH 7PRCH 1RG5H 1DV6H 2UWWH 5LSEH 1RQKH 1PSTH 1DXRH 1RZHH 1AIJH 2RCRH 4IN6H 1MPSH 2UXJH 1RY5H 3T6DH 1QOVH 1AIGH 2BNSC 1VRNH
chains in the Genus database with same CATH superfamily
2UX4H 2JBLH 6PRCH 1JGYH 4IN5H 1E6DH 1E14H 1PCRH 3I4DH 1K6LH 2GNUH 1JGXH 4HBJH 3DTSH 1FNQH 2BNPC 2HH1H 3DTAH 1RVJH 4TQQH 2GMRH 1L9JH 2UXMH 1F6NH 1RGNH 3WMMH 1JGZH 1OGVH 1DS8H 3V3ZH 3D38H 3DUQH 1JH0H 2JJ0H 5PRCH 1R2CH 1PRCH 4LWYH 1JGWH 2UX3H 3T6EH 2WJNH 1PSSH 1L9BH 4H99H 2HG9H 2HJ6H 2I5NH 2UWSH 1YF6H 2WX5H 4N7LH 4RCRH 4HBHH 3ZUWH 2X5UH 3DSYH 1YSTH 3V3YH 3DTRH 2UWTH 4N7KH 3PRCH 1KBYH 1FNPH 3ZUMH 3G7FH 2UWVH 3DU2H 2J8DH 5LRIH 2J8CH 2UX5H 1UMXH 1K6NH 4IN7H 3DU3H 2UXLH 4H9LH 2BOZH 2PRCH 2UWUH 1M3XH 1S00H 1RZZH 2WJMH 2HHKH 2JIYH 2HITH 2HG3H 4CASD 2X5VH 1EYSH 1DV3H 2UXKH 7PRCH 1RG5H 1DV6H 2UWWH 5LSEH 1RQKH 1PSTH 1DXRH 1RZHH 1AIJH 2RCRH 4IN6H 1MPSH 2UXJH 1RY5H 3T6DH 1QOVH 1AIGH 2BNSC 1VRNH
chains in the Genus database with same CATH topology
2UX4H 2JBLH 6PRCH 1JGYH 4IN5H 1E6DH 1E14H 1PCRH 3I4DH 1K6LH 2GNUH 1JGXH 4HBJH 3DTSH 1FNQH 2BNPC 2HH1H 3DTAH 1RVJH 4TQQH 2GMRH 1L9JH 2UXMH 1F6NH 1RGNH 3WMMH 1JGZH 1OGVH 1DS8H 3V3ZH 3D38H 3DUQH 1JH0H 2JJ0H 5PRCH 1R2CH 1PRCH 4LWYH 1JGWH 2UX3H 3T6EH 2WJNH 1PSSH 1L9BH 4H99H 2HG9H 2HJ6H 2I5NH 2UWSH 1YF6H 2WX5H 4N7LH 4RCRH 4HBHH 3ZUWH 2X5UH 3DSYH 1YSTH 3V3YH 3DTRH 2UWTH 4N7KH 3PRCH 1KBYH 1FNPH 3ZUMH 3G7FH 2UWVH 3DU2H 2J8DH 5LRIH 2J8CH 2UX5H 1UMXH 1K6NH 4IN7H 3DU3H 2UXLH 4H9LH 2BOZH 2PRCH 2UWUH 1M3XH 1S00H 1RZZH 2WJMH 2HHKH 2JIYH 2HITH 2HG3H 4CASD 2X5VH 1EYSH 1DV3H 2UXKH 7PRCH 1RG5H 1DV6H 2UWWH 5LSEH 1RQKH 1PSTH 1DXRH 1RZHH 1AIJH 2RCRH 4IN6H 1MPSH 2UXJH 1RY5H 3T6DH 1QOVH 1AIGH 2BNSC 1VRNH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UX4 H;  2JBL H;  6PRC H;  1JGY H;  4IN5 H;  1E6D H;  1E14 H;  1PCR H;  3I4D H;  1K6L H;  2GNU H;  1JGX H;  4HBJ H;  3DTS H;  1FNQ H;  2BNP C;  2HH1 H;  3DTA H;  1RVJ H;  4TQQ H;  2GMR H;  1L9J H;  2UXM H;  1F6N H;  1RGN H;  3WMM H;  1JGZ H;  1OGV H;  1DS8 H;  3V3Z H;  3D38 H;  3DUQ H;  1JH0 H;  2JJ0 H;  5PRC H;  1R2C H;  1PRC H;  4LWY H;  1JGW H;  2UX3 H;  3T6E H;  2WJN H;  1PSS H;  1L9B H;  4H99 H;  2HG9 H;  2HJ6 H;  2I5N H;  2UWS H;  1YF6 H;  2WX5 H;  4N7L H;  4RCR H;  4HBH H;  3ZUW H;  2X5U H;  3DSY H;  1YST H;  3V3Y H;  3DTR H;  2UWT H;  4N7K H;  3PRC H;  1KBY H;  1FNP H;  3ZUM H;  3G7F H;  2UWV H;  3DU2 H;  2J8D H;  5LRI H;  2J8C H;  2UX5 H;  1UMX H;  1K6N H;  4IN7 H;  3DU3 H;  2UXL H;  4H9L H;  2BOZ H;  2PRC H;  2UWU H;  1M3X H;  1S00 H;  1RZZ H;  2WJM H;  2HHK H;  2JIY H;  2HIT H;  2HG3 H;  4CAS D;  2X5V H;  1EYS H;  1DV3 H;  2UXK H;  7PRC H;  1RG5 H;  1DV6 H;  2UWW H;  5LSE H;  1RQK H;  1PST H;  1DXR H;  1RZH H;  1AIJ H;  2RCR H;  4IN6 H;  1MPS H;  2UXJ H;  1RY5 H;  3T6D H;  1QOV H;  1AIG H;  2BNS C;  1VRN H; 
#chains in the Genus database with same CATH topology
 2UX4 H;  2JBL H;  6PRC H;  1JGY H;  4IN5 H;  1E6D H;  1E14 H;  1PCR H;  3I4D H;  1K6L H;  2GNU H;  1JGX H;  4HBJ H;  3DTS H;  1FNQ H;  2BNP C;  2HH1 H;  3DTA H;  1RVJ H;  4TQQ H;  2GMR H;  1L9J H;  2UXM H;  1F6N H;  1RGN H;  3WMM H;  1JGZ H;  1OGV H;  1DS8 H;  3V3Z H;  3D38 H;  3DUQ H;  1JH0 H;  2JJ0 H;  5PRC H;  1R2C H;  1PRC H;  4LWY H;  1JGW H;  2UX3 H;  3T6E H;  2WJN H;  1PSS H;  1L9B H;  4H99 H;  2HG9 H;  2HJ6 H;  2I5N H;  2UWS H;  1YF6 H;  2WX5 H;  4N7L H;  4RCR H;  4HBH H;  3ZUW H;  2X5U H;  3DSY H;  1YST H;  3V3Y H;  3DTR H;  2UWT H;  4N7K H;  3PRC H;  1KBY H;  1FNP H;  3ZUM H;  3G7F H;  2UWV H;  3DU2 H;  2J8D H;  5LRI H;  2J8C H;  2UX5 H;  1UMX H;  1K6N H;  4IN7 H;  3DU3 H;  2UXL H;  4H9L H;  2BOZ H;  2PRC H;  2UWU H;  1M3X H;  1S00 H;  1RZZ H;  2WJM H;  2HHK H;  2JIY H;  2HIT H;  2HG3 H;  4CAS D;  2X5V H;  1EYS H;  1DV3 H;  2UXK H;  7PRC H;  1RG5 H;  1DV6 H;  2UWW H;  5LSE H;  1RQK H;  1PST H;  1DXR H;  1RZH H;  1AIJ H;  2RCR H;  4IN6 H;  1MPS H;  2UXJ H;  1RY5 H;  3T6D H;  1QOV H;  1AIG H;  2BNS C;  1VRN H; 
#chains in the Genus database with same CATH homology
 2UX4 H;  2JBL H;  6PRC H;  1JGY H;  4IN5 H;  1E6D H;  1E14 H;  1PCR H;  3I4D H;  1K6L H;  2GNU H;  1JGX H;  4HBJ H;  3DTS H;  1FNQ H;  2BNP C;  2HH1 H;  3DTA H;  1RVJ H;  4TQQ H;  2GMR H;  1L9J H;  2UXM H;  1F6N H;  1RGN H;  3WMM H;  1JGZ H;  1OGV H;  1DS8 H;  3V3Z H;  3D38 H;  3DUQ H;  1JH0 H;  2JJ0 H;  5PRC H;  1R2C H;  1PRC H;  4LWY H;  1JGW H;  2UX3 H;  3T6E H;  2WJN H;  1PSS H;  1L9B H;  4H99 H;  2HG9 H;  2HJ6 H;  2I5N H;  2UWS H;  1YF6 H;  2WX5 H;  4N7L H;  4RCR H;  4HBH H;  3ZUW H;  2X5U H;  3DSY H;  1YST H;  3V3Y H;  3DTR H;  2UWT H;  4N7K H;  3PRC H;  1KBY H;  1FNP H;  3ZUM H;  3G7F H;  2UWV H;  3DU2 H;  2J8D H;  5LRI H;  2J8C H;  2UX5 H;  1UMX H;  1K6N H;  4IN7 H;  3DU3 H;  2UXL H;  4H9L H;  2BOZ H;  2PRC H;  2UWU H;  1M3X H;  1S00 H;  1RZZ H;  2WJM H;  2HHK H;  2JIY H;  2HIT H;  2HG3 H;  4CAS D;  2X5V H;  1EYS H;  1DV3 H;  2UXK H;  7PRC H;  1RG5 H;  1DV6 H;  2UWW H;  5LSE H;  1RQK H;  1PST H;  1DXR H;  1RZH H;  1AIJ H;  2RCR H;  4IN6 H;  1MPS H;  2UXJ H;  1RY5 H;  3T6D H;  1QOV H;  1AIG H;  2BNS C;  1VRN H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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