3M7H | Genus

Total Genus 64

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	64
sequence length	272
structure length	272
Chain Sequence	RTRIPFNGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDGNLVIQDNGATVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVDSLALWNGTPAIPLVPGAIDSLLLAPGSELVQGVVYGAGASKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEKPVWARFGFQPTYRHIRKINPDQKPIDIWTWH

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antimicrobial protein
source organism	Pseudomonas sp.
publication title	Structural Determinants for Activity and Specificity of the Bacterial Toxin LlpA pubmed doi rcsb
molecule keywords	Putidacin L1
total genus	64
structure length	272
sequence length	272
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-03-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	3m7hA01
2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	3m7hA02
2.90.10.20	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Agglutinin, subunit A	3m7hA03

1B2PA 3R0EA 2D04A 5D5GB 1MSAA 4OIZA 4OITA 3A0DA 3R0EB 2D04B 5T1XA 4LE7A 3MEZA 1XD6A 1KJ1D 1KJ1A 1BWUD 4GC1A 1BWUA 5T20A 5T1XB 4OKCA 3M7JA 4PDTA 3MEZB 5D9ZA 5J76A 4TKCA 1JPCA 1DLPA 1NPLA 3A0EA 1XD5A 5T20B 4LEAA 4H3OA 5D9ZB 5J76B 3M7HA 3A0CA 4GC2A 5D5GA 2DPFA 3DZWA 1BWUQ 1BWUP 4LEDA 1NIVA
chains in the Genus database with same CATH superfamily

1B2PA 3R0EA 2D04A 5D5GB 1MSAA 4OIZA 4OITA 3A0DA 3R0EB 2D04B 4LE7A 5T1XA 3MEZA 1XD6A 1KJ1D 1KJ1A 1BWUD 4GC1A 1BWUA 5T20A 4OKCA 5T1XB 3M7JA 4PDTA 3MEZB 5D9ZA 5J76A 4TKCA 1JPCA 1DLPA 1NPLA 3A0EA 1XD5A 5T20B 4LEAA 4H3OA 5D9ZB 5J76B 3M7HA 3A0CA 4GC2A 5D5GA 2DPFA 3DZWA 1BWUQ 1BWUP 4LEDA 1NIVA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1B2P A;  3R0E A;  2D04 A;  5D5G B;  1MSA A;  4OIZ A;  4OIT A;  3A0D A;  3R0E B;  2D04 B;  5T1X A;  4LE7 A;  3MEZ A;  1XD6 A;  1KJ1 D;  1KJ1 A;  1BWU D;  4GC1 A;  1BWU A;  5T20 A;  5T1X B;  4OKC A;  3M7J A;  4PDT A;  3MEZ B;  5D9Z A;  5J76 A;  4TKC A;  1JPC A;  1DLP A;  1NPL A;  3A0E A;  1XD5 A;  5T20 B;  4LEA A;  4H3O A;  5D9Z B;  5J76 B;  3M7H A;  3A0C A;  4GC2 A;  5D5G A;  2DPF A;  3DZW A;  1BWU Q;  1BWU P;  4LED A;  1NIV A; 
#chains in the Genus database with same CATH topology
 1B2P A;  3R0E A;  2D04 A;  5D5G B;  1MSA A;  4OIZ A;  4OIT A;  3A0D A;  3R0E B;  2D04 B;  4LE7 A;  5T1X A;  3MEZ A;  1XD6 A;  1KJ1 D;  1KJ1 A;  1BWU D;  4GC1 A;  1BWU A;  5T20 A;  4OKC A;  5T1X B;  3M7J A;  4PDT A;  3MEZ B;  5D9Z A;  5J76 A;  4TKC A;  1JPC A;  1DLP A;  1NPL A;  3A0E A;  1XD5 A;  5T20 B;  4LEA A;  4H3O A;  5D9Z B;  5J76 B;  3M7H A;  3A0C A;  4GC2 A;  5D5G A;  2DPF A;  3DZW A;  1BWU Q;  1BWU P;  4LED A;  1NIV A; 
#chains in the Genus database with same CATH homology
 1B2P A;  3R0E A;  2D04 A;  5D5G B;  1MSA A;  4OIZ A;  4OIT A;  3A0D A;  3R0E B;  2D04 B;  5T1X A;  4LE7 A;  3MEZ A;  1XD6 A;  1KJ1 D;  1KJ1 A;  1BWU D;  4GC1 A;  1BWU A;  5T20 A;  5T1X B;  4OKC A;  3M7J A;  4PDT A;  3MEZ B;  5D9Z A;  5J76 A;  4TKC A;  1JPC A;  1DLP A;  1NPL A;  3A0E A;  1XD5 A;  5T20 B;  4LEA A;  4H3O A;  5D9Z B;  5J76 B;  3M7H A;  3A0C A;  4GC2 A;  5D5G A;  2DPF A;  3DZW A;  1BWU Q;  1BWU P;  4LED A;  1NIV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3M7HA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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