3R0E | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	110
structure length	110
Chain Sequence	NIPFTNNLLFSGQVLYGDGRLTAKNHQLVMQGDCNLVLYGGKYGWQSNTHGNGEHCFLRLNHKGELIIKDDDFKTIWSSRSSSKQGEYVLILQDDGFGVIYGPAIFETSS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 110 atoms

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110 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Crystal structure of a {beta}-prism II lectin from Remusatia vivipara. pubmed doi rcsb
molecule keywords	Lectin
total genus	25
structure length	110
sequence length	110
chains with identical sequence	D
ec nomenclature
pdb deposition date	2011-03-07

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	3r0eB00

5T20A 1MSAA 1NIVA 1XD6A 4GC1A 5T1XA 1XD5A 3DZWA 3MEZB 5D9ZA 1BWUD 1KJ1D 4GC2A 1BWUP 3A0EA 3MEZA 3M7HA 5J76B 4TKCA 1B2PA 3A0CA 5D5GB 2DPFA 3A0DA 4H3OA 1BWUQ 1NPLA 3R0EB 1JPCA 4PDTA 1DLPA 3M7JA 5J76A 2D04B 1BWUA 1KJ1A 5T20B 5T1XB 5D5GA 3R0EA 5D9ZB 2D04A
chains in the Genus database with same CATH superfamily

5T20A 1MSAA 1NIVA 1XD6A 4GC1A 5T1XA 1XD5A 3DZWA 3MEZB 5D9ZA 1BWUD 1KJ1D 4GC2A 4LEDA 4OKCA 1BWUP 3A0EA 3MEZA 3M7HA 4OITA 4TKCA 1B2PA 5J76B 3A0CA 5D5GB 2DPFA 4OIZA 3A0DA 4H3OA 1BWUQ 1NPLA 3R0EB 1JPCA 4PDTA 1DLPA 4LEAA 3M7JA 5J76A 2D04B 1BWUA 1KJ1A 5T20B 5T1XB 5D5GA 4LE7A 3R0EA 5D9ZB 2D04A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5T20 A;  1MSA A;  1NIV A;  1XD6 A;  4GC1 A;  5T1X A;  1XD5 A;  3DZW A;  3MEZ B;  5D9Z A;  1BWU D;  1KJ1 D;  4GC2 A;  1BWU P;  3A0E A;  3MEZ A;  3M7H A;  5J76 B;  4TKC A;  1B2P A;  3A0C A;  5D5G B;  2DPF A;  3A0D A;  4H3O A;  1BWU Q;  1NPL A;  3R0E B;  1JPC A;  4PDT A;  1DLP A;  3M7J A;  5J76 A;  2D04 B;  1BWU A;  1KJ1 A;  5T20 B;  5T1X B;  5D5G A;  3R0E A;  5D9Z B;  2D04 A; 
#chains in the Genus database with same CATH topology
 5T20 A;  1MSA A;  1NIV A;  1XD6 A;  4GC1 A;  5T1X A;  1XD5 A;  3DZW A;  3MEZ B;  5D9Z A;  1BWU D;  1KJ1 D;  4GC2 A;  4LED A;  4OKC A;  1BWU P;  3A0E A;  3MEZ A;  3M7H A;  4OIT A;  4TKC A;  1B2P A;  5J76 B;  3A0C A;  5D5G B;  2DPF A;  4OIZ A;  3A0D A;  4H3O A;  1BWU Q;  1NPL A;  3R0E B;  1JPC A;  4PDT A;  1DLP A;  4LEA A;  3M7J A;  5J76 A;  2D04 B;  1BWU A;  1KJ1 A;  5T20 B;  5T1X B;  5D5G A;  4LE7 A;  3R0E A;  5D9Z B;  2D04 A; 
#chains in the Genus database with same CATH homology
 5T20 A;  1MSA A;  1NIV A;  1XD6 A;  4GC1 A;  5T1X A;  1XD5 A;  3DZW A;  3MEZ B;  5D9Z A;  1BWU D;  1KJ1 D;  4GC2 A;  1BWU P;  3A0E A;  3MEZ A;  3M7H A;  5J76 B;  4TKC A;  1B2P A;  3A0C A;  5D5G B;  2DPF A;  3A0D A;  4H3O A;  1BWU Q;  1NPL A;  3R0E B;  1JPC A;  4PDT A;  1DLP A;  3M7J A;  5J76 A;  2D04 B;  1BWU A;  1KJ1 A;  5T20 B;  5T1X B;  5D5G A;  3R0E A;  5D9Z B;  2D04 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3R0EB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN