3VYGC

Crystal structure of thiocyanate hydrolase mutant r136w
Total Genus 65

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
217
structure length
215
Chain Sequence
EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLSYPWPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH3 (61-73)TIV1 (42-45)AH2 (46-58)S3 (175-180)EMPTYAH4 (75-83)AH5 (85-89)AH7 (159-166)TIV2 (95-98)TI1 (96-99)TIV3 (97-100)AH6 (149-155)TI2 (100-103)S2 (122-127)TIV4 (102-105)TI6 (155-158)TI3 (106-109)TIV5 (128-132)TI4 (107-110)O1 (134-136)3H2 (136-138)3H3 (144-147)S4 (186-190)TI7 (171-174)AH8 (202-207)TII1 (194-197)TII2 (197-200)AH9 (211-215)O2 (180-182)AH1 (26-41)S1 (113-117)3H1 (90-92)TI5 (119-122)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Thiobacillus thioparus
publication title Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
rcsb
molecule keywords Thiocyanate hydrolase subunit alpha
total genus 65
structure length 215
sequence length 217
chains with identical sequence F, I, L
ec nomenclature ec 3.5.5.8: Thiocyanate hydrolase.
pdb deposition date 2012-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02979 NHase_alpha Nitrile hydratase, alpha chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.330.10 Alpha Beta Alpha-Beta Complex Nitrile Hydratase; Chain A Nitrile hydratase alpha /Thiocyanate hydrolase gamma 3vygC00
2ZPEA 4OB1A 4ZGDA 1UGSA 3A8GA 3A8HA 4OB0A 3X20A 1UGQA 2ZPBA 1UGRA 2DD5C 2ZCFA 4OB2A 3VYHA 3A8OA 1IREA 3VYGC 2ZPIA 3QZ5A 2ZPGA 1V29A 2AHJA 1UGPA 2ZPFA 3X25A 4ZGEA 3X24A 3X26A 2CZ7A 2DXCC 2ZPHA 3QXEA 1AHJA 3HHTA 3QYGA 2DD4C 3WVEA 2CZ1A 2QDYA 3QZ9A 3QYHA 2DXBC 2ZZDC 3A8LA 3X28A 4FM4A 2D0QA 3WVDA 2CZ0A 2CZ6A 2CYZA 4OB3A 4ZGJA 3A8MA 2DPPA
chains in the Genus database with same CATH superfamily
2ZPEA 4OB1A 4ZGDA 1UGSA 3A8GA 3A8HA 4OB0A 3X20A 1UGQA 2ZPBA 1UGRA 2DD5C 2ZCFA 4OB2A 3VYHA 3A8OA 1IREA 3VYGC 2ZPIA 3QZ5A 2ZPGA 1V29A 2AHJA 1UGPA 2ZPFA 3X25A 4ZGEA 3X24A 3X26A 2CZ7A 2DXCC 2ZPHA 3QXEA 1AHJA 3HHTA 3QYGA 2DD4C 3WVEA 2CZ1A 2QDYA 3QZ9A 3QYHA 2DXBC 2ZZDC 3A8LA 3X28A 4FM4A 2D0QA 3WVDA 2CZ0A 2CZ6A 2CYZA 4OB3A 4ZGJA 3A8MA 2DPPA
chains in the Genus database with same CATH topology
2ZPEA 4OB1A 4ZGDA 1UGSA 3A8GA 3A8HA 4OB0A 3X20A 1UGQA 2ZPBA 1UGRA 2DD5C 2ZCFA 4OB2A 3VYHA 3A8OA 1IREA 3VYGC 2ZPIA 3QZ5A 2ZPGA 1V29A 2AHJA 1UGPA 2ZPFA 3X25A 4ZGEA 3X24A 3X26A 2CZ7A 2DXCC 2ZPHA 3QXEA 1AHJA 3HHTA 3QYGA 2DD4C 3WVEA 2CZ1A 2QDYA 3QZ9A 3QYHA 2DXBC 2ZZDC 3A8LA 3X28A 4FM4A 2D0QA 3WVDA 2CZ0A 2CZ6A 2CYZA 4OB3A 4ZGJA 3A8MA 2DPPA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2ZPE A;  4OB1 A;  4ZGD A;  1UGS A;  3A8G A;  3A8H A;  4OB0 A;  3X20 A;  1UGQ A;  2ZPB A;  1UGR A;  2DD5 C;  2ZCF A;  4OB2 A;  3VYH A;  3A8O A;  1IRE A;  3VYG C;  2ZPI A;  3QZ5 A;  2ZPG A;  1V29 A;  2AHJ A;  1UGP A;  2ZPF A;  3X25 A;  4ZGE A;  3X24 A;  3X26 A;  2CZ7 A;  2DXC C;  2ZPH A;  3QXE A;  1AHJ A;  3HHT A;  3QYG A;  2DD4 C;  3WVE A;  2CZ1 A;  2QDY A;  3QZ9 A;  3QYH A;  2DXB C;  2ZZD C;  3A8L A;  3X28 A;  4FM4 A;  2D0Q A;  3WVD A;  2CZ0 A;  2CZ6 A;  2CYZ A;  4OB3 A;  4ZGJ A;  3A8M A;  2DPP A; 
#chains in the Genus database with same CATH topology
 2ZPE A;  4OB1 A;  4ZGD A;  1UGS A;  3A8G A;  3A8H A;  4OB0 A;  3X20 A;  1UGQ A;  2ZPB A;  1UGR A;  2DD5 C;  2ZCF A;  4OB2 A;  3VYH A;  3A8O A;  1IRE A;  3VYG C;  2ZPI A;  3QZ5 A;  2ZPG A;  1V29 A;  2AHJ A;  1UGP A;  2ZPF A;  3X25 A;  4ZGE A;  3X24 A;  3X26 A;  2CZ7 A;  2DXC C;  2ZPH A;  3QXE A;  1AHJ A;  3HHT A;  3QYG A;  2DD4 C;  3WVE A;  2CZ1 A;  2QDY A;  3QZ9 A;  3QYH A;  2DXB C;  2ZZD C;  3A8L A;  3X28 A;  4FM4 A;  2D0Q A;  3WVD A;  2CZ0 A;  2CZ6 A;  2CYZ A;  4OB3 A;  4ZGJ A;  3A8M A;  2DPP A; 
#chains in the Genus database with same CATH homology
 2ZPE A;  4OB1 A;  4ZGD A;  1UGS A;  3A8G A;  3A8H A;  4OB0 A;  3X20 A;  1UGQ A;  2ZPB A;  1UGR A;  2DD5 C;  2ZCF A;  4OB2 A;  3VYH A;  3A8O A;  1IRE A;  3VYG C;  2ZPI A;  3QZ5 A;  2ZPG A;  1V29 A;  2AHJ A;  1UGP A;  2ZPF A;  3X25 A;  4ZGE A;  3X24 A;  3X26 A;  2CZ7 A;  2DXC C;  2ZPH A;  3QXE A;  1AHJ A;  3HHT A;  3QYG A;  2DD4 C;  3WVE A;  2CZ1 A;  2QDY A;  3QZ9 A;  3QYH A;  2DXB C;  2ZZD C;  3A8L A;  3X28 A;  4FM4 A;  2D0Q A;  3WVD A;  2CZ0 A;  2CZ6 A;  2CYZ A;  4OB3 A;  4ZGJ A;  3A8M A;  2DPP A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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