The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
169
|
structure length |
169
|
Chain Sequence |
TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKIDAGYHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Phage Dutpases Control Transfer of Virulence Genes by a Proto-Oncogenic G Protein-Like Mechanism.
pubmed doi rcsb |
| molecule keywords |
DUTPASE
|
| molecule tags |
Hydrolase
|
| source organism |
Staphylococcus phage 80alpha
|
| total genus |
25
|
| structure length |
169
|
| sequence length |
169
|
| ec nomenclature |
ec
3.6.1.23: dUTP diphosphatase. |
| pdb deposition date | 2012-12-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00692 | dUTPase | dUTPase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Distorted Sandwich | Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A | Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A |
#chains in the Genus database with same CATH superfamily 2J4Q A; 3TRN A; 3KM3 A; 3ZF6 A; 3ECY A; 3ZF3 A; 2XCE A; 3C3I A; 3CA9 A; 2HQU A; 2PC5 A; 1Q5U X; 3TPN A; 4AO5 A; 1SEH A; 2YZJ A; 2WE2 A; 3T60 A; 5EDD A; 3TTA A; 1DUP A; 2J4H A; 4A6A A; 1XS4 A; 2V9X A; 1RNJ A; 1Q5H A; 2OL1 A; 3P48 A; 3T64 A; 3GF0 A; 1PKH A; 2R9Q A; 1EU5 A; 2OKD A; 4OOP A; 1DUT A; 4LHR A; 1SNF A; 1XS1 A; 1RN8 A; 3TSL A; 3TS6 A; 3TPY A; 2OL0 A; 2WE1 A; 2XCD A; 3TPW A; 2WE0 A; 1F7Q A; 1F7N A; 1VYQ A; 4WRK A; 3TRL A; 3TQ4 A; 1DUN A; 2HR6 A; 3LOJ A; 2Y8C A; 2WE3 A; 3ZF0 A; 3ZF5 A; 3ZEZ A; 2HXB A; 2QLP A; 2ZDC A; 3ARN A; 1F7O A; 2BAZ A; 2XX6 A; 1SLH A; 1OGH A; 4OOQ A; 2BSY A; 2HXD A; 1XS6 A; 1SIX A; 2HRM A; 2Y1T A; 3C2T A; 3EHW A; 4DHK A; 3HZA A; 2PY4 A; 3TP1 A; 2XY3 A; 3MDX A; 3ARA A; 2OKE A; 2QXX A; 3ZF4 A; 1PKJ A; 4B0H A; 4GCY A; 2OKB A; 5F9K A; 1F7D A; 1SM8 A; 3ZF2 A; 4AOO A; 4GV8 A; 4AOZ A; 1EUW A; 1SYL A; 5CCT A; 1F7P A; 1F7R A; 3TPS A; 3MBQ A; 3SO2 A; 1DUC A; 1F7K A; 3TQ3 A; 3HHQ A; 4XJC A; 1PKK A; 5ECT A; 3T6Y A; 3ZF1 A; 3TQZ A; 2D4L A; 2D4N A; 1MQ7 A; 4GK6 A; 3H6D A; 2BT1 A; 3TQ5 A; 1SJN A; 2D4M A; 3LQW A; 5CCO A; 3T70 A; 1DUD A; 4APZ 1; 3H6X A; 3I93 A; 1SMC A; 3F4F A; #chains in the Genus database with same CATH topology 2J4Q A; 3TRN A; 3KM3 A; 3ZF6 A; 3ECY A; 3ZF3 A; 2XCE A; 3C3I A; 3CA9 A; 2HQU A; 2PC5 A; 1Q5U X; 3TPN A; 4AO5 A; 1SEH A; 2YZJ A; 2WE2 A; 3T60 A; 5EDD A; 3TTA A; 1DUP A; 2J4H A; 4A6A A; 1XS4 A; 2V9X A; 1RNJ A; 1Q5H A; 2OL1 A; 3P48 A; 3T64 A; 3GF0 A; 1PKH A; 2R9Q A; 1EU5 A; 2OKD A; 4OOP A; 1DUT A; 4LHR A; 1SNF A; 1XS1 A; 1RN8 A; 3TSL A; 3TS6 A; 3TPY A; 2OL0 A; 2WE1 A; 2XCD A; 3TPW A; 2WE0 A; 1F7Q A; 1F7N A; 1VYQ A; 4WRK A; 3TRL A; 3TQ4 A; 1DUN A; 2HR6 A; 3LOJ A; 2Y8C A; 2WE3 A; 3ZF0 A; 3ZF5 A; 1TUL A; 3ZEZ A; 2HXB A; 2QLP A; 2ZDC A; 3ARN A; 1F7O A; 2BAZ A; 2XX6 A; 1SLH A; 1OGH A; 4OOQ A; 2BSY A; 2HXD A; 1XS6 A; 1SIX A; 2HRM A; 2Y1T A; 3C2T A; 3EHW A; 4DHK A; 3HZA A; 2PY4 A; 3TP1 A; 2XY3 A; 3MDX A; 3ARA A; 2OKE A; 2QXX A; 3ZF4 A; 1PKJ A; 4B0H A; 4GCY A; 2OKB A; 5F9K A; 1F7D A; 1SM8 A; 3ZF2 A; 4AOO A; 4GV8 A; 4AOZ A; 1EUW A; 1SYL A; 5CCT A; 1F7P A; 1F7R A; 3TPS A; 3MBQ A; 3SO2 A; 1DUC A; 1F7K A; 3TQ3 A; 3HHQ A; 4XJC A; 1PKK A; 5ECT A; 3T6Y A; 3ZF1 A; 3TQZ A; 2D4L A; 2D4N A; 1MQ7 A; 4GK6 A; 3H6D A; 2BT1 A; 3TQ5 A; 1SJN A; 2D4M A; 3LQW A; 5CCO A; 3T70 A; 1DUD A; 4APZ 1; 3H6X A; 3I93 A; 1SMC A; 3F4F A; #chains in the Genus database with same CATH homology 2J4Q A; 3TRN A; 3KM3 A; 3ZF6 A; 3ECY A; 3ZF3 A; 2XCE A; 3C3I A; 3CA9 A; 2HQU A; 2PC5 A; 1Q5U X; 3TPN A; 4AO5 A; 1SEH A; 2YZJ A; 2WE2 A; 3T60 A; 5EDD A; 3TTA A; 1DUP A; 2J4H A; 4A6A A; 1XS4 A; 2V9X A; 1RNJ A; 1Q5H A; 2OL1 A; 3P48 A; 3T64 A; 3GF0 A; 1PKH A; 2R9Q A; 1EU5 A; 2OKD A; 4OOP A; 1DUT A; 4LHR A; 1SNF A; 1XS1 A; 1RN8 A; 3TSL A; 3TS6 A; 3TPY A; 2OL0 A; 2WE1 A; 2XCD A; 3TPW A; 2WE0 A; 1F7Q A; 1F7N A; 1VYQ A; 4WRK A; 3TRL A; 3TQ4 A; 1DUN A; 2HR6 A; 3LOJ A; 2Y8C A; 2WE3 A; 3ZF0 A; 3ZF5 A; 3ZEZ A; 2HXB A; 2QLP A; 2ZDC A; 3ARN A; 1F7O A; 2BAZ A; 2XX6 A; 1SLH A; 1OGH A; 4OOQ A; 2BSY A; 2HXD A; 1XS6 A; 1SIX A; 2HRM A; 2Y1T A; 3C2T A; 3EHW A; 4DHK A; 3HZA A; 2PY4 A; 3TP1 A; 2XY3 A; 3MDX A; 3ARA A; 2OKE A; 2QXX A; 3ZF4 A; 1PKJ A; 4B0H A; 4GCY A; 2OKB A; 5F9K A; 1F7D A; 1SM8 A; 3ZF2 A; 4AOO A; 4GV8 A; 4AOZ A; 1EUW A; 1SYL A; 5CCT A; 1F7P A; 1F7R A; 3TPS A; 3MBQ A; 3SO2 A; 1DUC A; 1F7K A; 3TQ3 A; 3HHQ A; 4XJC A; 1PKK A; 5ECT A; 3T6Y A; 3ZF1 A; 3TQZ A; 2D4L A; 2D4N A; 1MQ7 A; 4GK6 A; 3H6D A; 2BT1 A; 3TQ5 A; 1SJN A; 2D4M A; 3LQW A; 5CCO A; 3T70 A; 1DUD A; 4APZ 1; 3H6X A; 3I93 A; 1SMC A; 3F4F A;
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