4A6AA

A115v variant of dctp deaminase-dutpase from mycobacterium tuberculosis in complex with dttp
Total Genus 40
204060801001201401601800510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
189
structure length
189
Chain Sequence
MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTVGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHPYGSSRAGSKYQGQRGPTPSRSYQNFIRS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-3)S16 (144-153)AH1 (5-14)EMPTYTI1 (28-31)3H1 (24-26)S3 (27-28)S4 (31-36)TII4 (141-144)S5 (40-43)S8 (78-83)S6 (61-64)TI3 (57-60)TI2 (52-55)TI6 (181-184)TII1 (67-70)S14 (127-132)S7 (72-74)TII2 (75-78)TII3 (119-122)TIV3 (91-94)TVIII2 (158-161)TIV6 (154-157)S10 (94-99)S12 (117-118)AH2 (102-106)S11 (109-110)TIV4 (110-113)S13 (122-124)TII5 (161-164)TIV7 (169-172)TII6 (171-174)TI4 (164-167)TII7 (183-186)S2 (18-20)S9 (87-90)TIV2 (45-48)S15 (138-140)TVIII1 (15-18)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
publication title Dttp Inhibition of the Bifunctional Dctp Deaminase- Dutpase from Mycobacterium Tuberculosis is Ph Dependent: Kinetic Analyses and Crystal Structure of A115V Variant
rcsb
molecule keywords DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE
total genus 40
structure length 189
sequence length 189
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 3.5.4.30: dCTP deaminase (dUMP-forming).
pdb deposition date 2011-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 4a6aA00
3TSLA 2PY4A 1F7QA 3TPYA 4AOZA 3KM3A 3HZAA 5F9KA 4A6AA 3ARNA 1DUTA 3EHWA 3TTAA 3H6DA 1SM8A 1SMCA 2WE2A 3ZF6A 2XCEA 4OOQA 5CCTA 3GF0A 4GK6A 2J4QA 4WRKA 3T70A 4APZ1 1DUPA 2QXXA 3TP1A 3T60A 3ZF1A 3I93A 4GV8A 2R9QA 3F4FA 5ECTA 3P48A 1SNFA 2YZJA 1MQ7A 2WE0A 2QLPA 1DUNA 1RNJA 2HRMA 1SJNA 1PKKA 2XY3A 1XS4A 2J4HA 3TS6A 2D4NA 3ZF4A 3LOJA 3ARAA 2D4MA 3HHQA 3TQ5A 2XX6A 3TQZA 3ZEZA 3TRLA 1OGHA 5CCOA 2ZDCA 2BT1A 4DHKA 3ZF2A 3H6XA 1F7OA 4AOOA 3TQ3A 1SEHA 1XS1A 2PC5A 1F7PA 4GCYA 1F7RA 1XS6A 2OL0A 1VYQA 1DUDA 2OL1A 4XJCA 3T64A 1EUWA 1RN8A 2D4LA 3MBQA 2OKDA 3TQ4A 3T6YA 3C3IA 3SO2A 1EU5A 3TPWA 3C2TA 1Q5HA 2BSYA 4B0HA 2V9XA 5EDDA 1Q5UX 2HQUA 3TPNA 1SLHA 4LHRA 4OOPA 1F7KA 2XCDA 1PKHA 3ZF0A 1F7DA 3ECYA 1DUCA 1SIXA 2BAZA 3MDXA 2WE1A 2OKBA 2WE3A 3ZF3A 2Y1TA 1SYLA 2Y8CA 2HXDA 4AO5A 1PKJA 1F7NA 2OKEA 3TPSA 3ZF5A 3CA9A 3TRNA 3LQWA 2HXBA 2HR6A
chains in the Genus database with same CATH superfamily
3TSLA 2PY4A 1F7QA 3TPYA 4AOZA 3KM3A 3HZAA 5F9KA 4A6AA 3ARNA 1DUTA 3EHWA 3TTAA 3H6DA 1SM8A 1SMCA 2WE2A 3ZF6A 2XCEA 4OOQA 5CCTA 3GF0A 4GK6A 2J4QA 4WRKA 3T70A 4APZ1 1DUPA 2QXXA 3TP1A 3T60A 3ZF1A 3I93A 4GV8A 2R9QA 3F4FA 5ECTA 3P48A 1SNFA 2YZJA 1MQ7A 2WE0A 2QLPA 1DUNA 1RNJA 2HRMA 1SJNA 1PKKA 2XY3A 1XS4A 2J4HA 3TS6A 2D4NA 3ZF4A 3LOJA 3ARAA 2D4MA 3HHQA 3TQ5A 2XX6A 3TQZA 3ZEZA 3TRLA 1OGHA 5CCOA 2ZDCA 2BT1A 4DHKA 3ZF2A 3H6XA 1F7OA 4AOOA 3TQ3A 1SEHA 1XS1A 2PC5A 1F7PA 4GCYA 1F7RA 1XS6A 2OL0A 1VYQA 1DUDA 2OL1A 4XJCA 3T64A 1EUWA 1RN8A 2D4LA 3MBQA 2OKDA 3TQ4A 1TULA 3T6YA 3C3IA 3SO2A 1EU5A 3TPWA 3C2TA 1Q5HA 2BSYA 4B0HA 2V9XA 5EDDA 1Q5UX 2HQUA 3TPNA 1SLHA 4LHRA 4OOPA 1F7KA 2XCDA 1PKHA 3ZF0A 1F7DA 3ECYA 1DUCA 1SIXA 2BAZA 3MDXA 2WE1A 2OKBA 2WE3A 3ZF3A 2Y1TA 1SYLA 2Y8CA 2HXDA 4AO5A 1PKJA 1F7NA 2OKEA 3TPSA 3ZF5A 3CA9A 3TRNA 3LQWA 2HXBA 2HR6A
chains in the Genus database with same CATH topology
3TSLA 2PY4A 1F7QA 3TPYA 4AOZA 3KM3A 3HZAA 5F9KA 4A6AA 3ARNA 1DUTA 3EHWA 3TTAA 3H6DA 1SM8A 1SMCA 2WE2A 3ZF6A 2XCEA 4OOQA 5CCTA 3GF0A 4GK6A 2J4QA 4WRKA 3T70A 4APZ1 1DUPA 2QXXA 3TP1A 3T60A 3ZF1A 3I93A 4GV8A 2R9QA 3F4FA 5ECTA 3P48A 1SNFA 2YZJA 1MQ7A 2WE0A 2QLPA 1DUNA 1RNJA 2HRMA 1SJNA 1PKKA 2XY3A 1XS4A 2J4HA 3TS6A 2D4NA 3ZF4A 3LOJA 3ARAA 2D4MA 3HHQA 3TQ5A 2XX6A 3TQZA 3ZEZA 3TRLA 1OGHA 5CCOA 2ZDCA 2BT1A 4DHKA 3ZF2A 3H6XA 1F7OA 4AOOA 3TQ3A 1SEHA 1XS1A 2PC5A 1F7PA 4GCYA 1F7RA 1XS6A 2OL0A 1VYQA 1DUDA 2OL1A 4XJCA 3T64A 1EUWA 1RN8A 2D4LA 3MBQA 2OKDA 3TQ4A 3T6YA 3C3IA 3SO2A 1EU5A 3TPWA 3C2TA 1Q5HA 2BSYA 4B0HA 2V9XA 5EDDA 1Q5UX 2HQUA 3TPNA 1SLHA 4LHRA 4OOPA 1F7KA 2XCDA 1PKHA 3ZF0A 1F7DA 3ECYA 1DUCA 1SIXA 2BAZA 3MDXA 2WE1A 2OKBA 2WE3A 3ZF3A 2Y1TA 1SYLA 2Y8CA 2HXDA 4AO5A 1PKJA 1F7NA 2OKEA 3TPSA 3ZF5A 3CA9A 3TRNA 3LQWA 2HXBA 2HR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TSL A;  2PY4 A;  1F7Q A;  3TPY A;  4AOZ A;  3KM3 A;  3HZA A;  5F9K A;  4A6A A;  3ARN A;  1DUT A;  3EHW A;  3TTA A;  3H6D A;  1SM8 A;  1SMC A;  2WE2 A;  3ZF6 A;  2XCE A;  4OOQ A;  5CCT A;  3GF0 A;  4GK6 A;  2J4Q A;  4WRK A;  3T70 A;  4APZ 1;  1DUP A;  2QXX A;  3TP1 A;  3T60 A;  3ZF1 A;  3I93 A;  4GV8 A;  2R9Q A;  3F4F A;  5ECT A;  3P48 A;  1SNF A;  2YZJ A;  1MQ7 A;  2WE0 A;  2QLP A;  1DUN A;  1RNJ A;  2HRM A;  1SJN A;  1PKK A;  2XY3 A;  1XS4 A;  2J4H A;  3TS6 A;  2D4N A;  3ZF4 A;  3LOJ A;  3ARA A;  2D4M A;  3HHQ A;  3TQ5 A;  2XX6 A;  3TQZ A;  3ZEZ A;  3TRL A;  1OGH A;  5CCO A;  2ZDC A;  2BT1 A;  4DHK A;  3ZF2 A;  3H6X A;  1F7O A;  4AOO A;  3TQ3 A;  1SEH A;  1XS1 A;  2PC5 A;  1F7P A;  4GCY A;  1F7R A;  1XS6 A;  2OL0 A;  1VYQ A;  1DUD A;  2OL1 A;  4XJC A;  3T64 A;  1EUW A;  1RN8 A;  2D4L A;  3MBQ A;  2OKD A;  3TQ4 A;  3T6Y A;  3C3I A;  3SO2 A;  1EU5 A;  3TPW A;  3C2T A;  1Q5H A;  2BSY A;  4B0H A;  2V9X A;  5EDD A;  1Q5U X;  2HQU A;  3TPN A;  1SLH A;  4LHR A;  4OOP A;  1F7K A;  2XCD A;  1PKH A;  3ZF0 A;  1F7D A;  3ECY A;  1DUC A;  1SIX A;  2BAZ A;  3MDX A;  2WE1 A;  2OKB A;  2WE3 A;  3ZF3 A;  2Y1T A;  1SYL A;  2Y8C A;  2HXD A;  4AO5 A;  1PKJ A;  1F7N A;  2OKE A;  3TPS A;  3ZF5 A;  3CA9 A;  3TRN A;  3LQW A;  2HXB A;  2HR6 A; 
#chains in the Genus database with same CATH topology
 3TSL A;  2PY4 A;  1F7Q A;  3TPY A;  4AOZ A;  3KM3 A;  3HZA A;  5F9K A;  4A6A A;  3ARN A;  1DUT A;  3EHW A;  3TTA A;  3H6D A;  1SM8 A;  1SMC A;  2WE2 A;  3ZF6 A;  2XCE A;  4OOQ A;  5CCT A;  3GF0 A;  4GK6 A;  2J4Q A;  4WRK A;  3T70 A;  4APZ 1;  1DUP A;  2QXX A;  3TP1 A;  3T60 A;  3ZF1 A;  3I93 A;  4GV8 A;  2R9Q A;  3F4F A;  5ECT A;  3P48 A;  1SNF A;  2YZJ A;  1MQ7 A;  2WE0 A;  2QLP A;  1DUN A;  1RNJ A;  2HRM A;  1SJN A;  1PKK A;  2XY3 A;  1XS4 A;  2J4H A;  3TS6 A;  2D4N A;  3ZF4 A;  3LOJ A;  3ARA A;  2D4M A;  3HHQ A;  3TQ5 A;  2XX6 A;  3TQZ A;  3ZEZ A;  3TRL A;  1OGH A;  5CCO A;  2ZDC A;  2BT1 A;  4DHK A;  3ZF2 A;  3H6X A;  1F7O A;  4AOO A;  3TQ3 A;  1SEH A;  1XS1 A;  2PC5 A;  1F7P A;  4GCY A;  1F7R A;  1XS6 A;  2OL0 A;  1VYQ A;  1DUD A;  2OL1 A;  4XJC A;  3T64 A;  1EUW A;  1RN8 A;  2D4L A;  3MBQ A;  2OKD A;  3TQ4 A;  1TUL A;  3T6Y A;  3C3I A;  3SO2 A;  1EU5 A;  3TPW A;  3C2T A;  1Q5H A;  2BSY A;  4B0H A;  2V9X A;  5EDD A;  1Q5U X;  2HQU A;  3TPN A;  1SLH A;  4LHR A;  4OOP A;  1F7K A;  2XCD A;  1PKH A;  3ZF0 A;  1F7D A;  3ECY A;  1DUC A;  1SIX A;  2BAZ A;  3MDX A;  2WE1 A;  2OKB A;  2WE3 A;  3ZF3 A;  2Y1T A;  1SYL A;  2Y8C A;  2HXD A;  4AO5 A;  1PKJ A;  1F7N A;  2OKE A;  3TPS A;  3ZF5 A;  3CA9 A;  3TRN A;  3LQW A;  2HXB A;  2HR6 A; 
#chains in the Genus database with same CATH homology
 3TSL A;  2PY4 A;  1F7Q A;  3TPY A;  4AOZ A;  3KM3 A;  3HZA A;  5F9K A;  4A6A A;  3ARN A;  1DUT A;  3EHW A;  3TTA A;  3H6D A;  1SM8 A;  1SMC A;  2WE2 A;  3ZF6 A;  2XCE A;  4OOQ A;  5CCT A;  3GF0 A;  4GK6 A;  2J4Q A;  4WRK A;  3T70 A;  4APZ 1;  1DUP A;  2QXX A;  3TP1 A;  3T60 A;  3ZF1 A;  3I93 A;  4GV8 A;  2R9Q A;  3F4F A;  5ECT A;  3P48 A;  1SNF A;  2YZJ A;  1MQ7 A;  2WE0 A;  2QLP A;  1DUN A;  1RNJ A;  2HRM A;  1SJN A;  1PKK A;  2XY3 A;  1XS4 A;  2J4H A;  3TS6 A;  2D4N A;  3ZF4 A;  3LOJ A;  3ARA A;  2D4M A;  3HHQ A;  3TQ5 A;  2XX6 A;  3TQZ A;  3ZEZ A;  3TRL A;  1OGH A;  5CCO A;  2ZDC A;  2BT1 A;  4DHK A;  3ZF2 A;  3H6X A;  1F7O A;  4AOO A;  3TQ3 A;  1SEH A;  1XS1 A;  2PC5 A;  1F7P A;  4GCY A;  1F7R A;  1XS6 A;  2OL0 A;  1VYQ A;  1DUD A;  2OL1 A;  4XJC A;  3T64 A;  1EUW A;  1RN8 A;  2D4L A;  3MBQ A;  2OKD A;  3TQ4 A;  3T6Y A;  3C3I A;  3SO2 A;  1EU5 A;  3TPW A;  3C2T A;  1Q5H A;  2BSY A;  4B0H A;  2V9X A;  5EDD A;  1Q5U X;  2HQU A;  3TPN A;  1SLH A;  4LHR A;  4OOP A;  1F7K A;  2XCD A;  1PKH A;  3ZF0 A;  1F7D A;  3ECY A;  1DUC A;  1SIX A;  2BAZ A;  3MDX A;  2WE1 A;  2OKB A;  2WE3 A;  3ZF3 A;  2Y1T A;  1SYL A;  2Y8C A;  2HXD A;  4AO5 A;  1PKJ A;  1F7N A;  2OKE A;  3TPS A;  3ZF5 A;  3CA9 A;  3TRN A;  3LQW A;  2HXB A;  2HR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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