4AO5 | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	128
structure length	128
Chain Sequence	MQIKIKYLDETQTRINKMEQGDWIDLRAAEDVAIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPAVDLIEVDRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Bacillus subtilis
publication title	Tying Down the Arm in Bacillus Dutpase: Structure and Mechanism pubmed doi rcsb
molecule keywords	SPBC2 PROPHAGE-DERIVED DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEO T
total genus	23
structure length	128
sequence length	128
chains with identical sequence	B, C, D, E, F
ec nomenclature	ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date	2012-03-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00692	dUTPase	dUTPase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	4ao5A01

1F7NA 4GCYA 3TPNA 3TPSA 2HXBA 1F7QA 1SLHA 2PC5A 3I93A 2QLPA 1RN8A 3ZF6A 3T60A 2YZJA 5EDDA 3TQ5A 1DUNA 1PKKA 3EHWA 3F4FA 2BT1A 2OKBA 2HXDA 3TRLA 3P48A 1SEHA 1DUDA 3TSLA 4GV8A 2D4NA 2XCEA 3ARAA 2BAZA 1Q5UX 3ZF2A 1EU5A 2HQUA 1EUWA 5CCTA 4WRKA 2BSYA 1SMCA 1SNFA 3C3IA 3LOJA 1MQ7A 1F7KA 2D4MA 2OL0A 3C2TA 2OL1A 4DHKA 3HHQA 1XS6A 3SO2A 1PKHA 3KM3A 1DUPA 3ECYA 3HZAA 3T64A 4AO5A 3TRNA 2QXXA 4AOZA 3TQ4A 2XX6A 2PY4A 2V9XA 2WE2A 3TQZA 3MDXA 2XCDA 1XS1A 3TP1A 5ECTA 3CA9A 2WE0A 3TPYA 2OKEA 3MBQA 3GF0A 2D4LA 4OOQA 4A6AA 2OKDA 3ZF5A 3H6DA 3H6XA 1F7RA 4B0HA 1XS4A 1SYLA 1DUCA 1F7DA 2WE1A 2Y8CA 4AOOA 2J4HA 3T6YA 2XY3A 1OGHA 3TQ3A 4APZ1 2HR6A 1DUTA 2ZDCA 1SJNA 1SIXA 3ZF3A 5CCOA 4LHRA 1PKJA 2HRMA 4GK6A 5F9KA 3LQWA 4OOPA 1RNJA 1F7OA 3T70A 3ZF1A 3TPWA 3ARNA 1SM8A 1Q5HA 2J4QA 2WE3A 2R9QA 1F7PA 3TS6A 3ZF0A 1VYQA 4XJCA 3ZEZA 3TTAA 3ZF4A 2Y1TA
chains in the Genus database with same CATH superfamily

1F7NA 4GCYA 3TPNA 3TPSA 2HXBA 1F7QA 1SLHA 2PC5A 3I93A 2QLPA 1RN8A 3ZF6A 3T60A 2YZJA 5EDDA 3TQ5A 1DUNA 1PKKA 3EHWA 3F4FA 2BT1A 2OKBA 2HXDA 3TRLA 3P48A 1SEHA 1DUDA 3TSLA 4GV8A 1TULA 2D4NA 2XCEA 3ARAA 2BAZA 1Q5UX 3ZF2A 1EU5A 2HQUA 1EUWA 5CCTA 4WRKA 2BSYA 1SMCA 1SNFA 3C3IA 3LOJA 1MQ7A 1F7KA 2D4MA 2OL0A 3C2TA 2OL1A 4DHKA 3HHQA 1XS6A 3SO2A 1PKHA 3KM3A 1DUPA 3ECYA 3HZAA 3T64A 4AO5A 3TRNA 2QXXA 4AOZA 3TQ4A 2XX6A 2PY4A 2V9XA 2WE2A 3TQZA 3MDXA 2XCDA 1XS1A 3TP1A 5ECTA 3CA9A 2WE0A 3TPYA 2OKEA 3MBQA 3GF0A 2D4LA 4OOQA 4A6AA 2OKDA 3ZF5A 3H6DA 3H6XA 1F7RA 4B0HA 1XS4A 1SYLA 1DUCA 1F7DA 2WE1A 2Y8CA 4AOOA 2J4HA 3T6YA 2XY3A 1OGHA 3TQ3A 4APZ1 2HR6A 1DUTA 2ZDCA 1SJNA 1SIXA 3ZF3A 5CCOA 4LHRA 1PKJA 2HRMA 4GK6A 5F9KA 3LQWA 4OOPA 1RNJA 1F7OA 3T70A 3ZF1A 3TPWA 3ARNA 1SM8A 1Q5HA 2J4QA 2WE3A 2R9QA 1F7PA 3TS6A 3ZF0A 1VYQA 4XJCA 3ZEZA 3TTAA 3ZF4A 2Y1TA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1F7N A;  4GCY A;  3TPN A;  3TPS A;  2HXB A;  1F7Q A;  1SLH A;  2PC5 A;  3I93 A;  2QLP A;  1RN8 A;  3ZF6 A;  3T60 A;  2YZJ A;  5EDD A;  3TQ5 A;  1DUN A;  1PKK A;  3EHW A;  3F4F A;  2BT1 A;  2OKB A;  2HXD A;  3TRL A;  3P48 A;  1SEH A;  1DUD A;  3TSL A;  4GV8 A;  2D4N A;  2XCE A;  3ARA A;  2BAZ A;  1Q5U X;  3ZF2 A;  1EU5 A;  2HQU A;  1EUW A;  5CCT A;  4WRK A;  2BSY A;  1SMC A;  1SNF A;  3C3I A;  3LOJ A;  1MQ7 A;  1F7K A;  2D4M A;  2OL0 A;  3C2T A;  2OL1 A;  4DHK A;  3HHQ A;  1XS6 A;  3SO2 A;  1PKH A;  3KM3 A;  1DUP A;  3ECY A;  3HZA A;  3T64 A;  4AO5 A;  3TRN A;  2QXX A;  4AOZ A;  3TQ4 A;  2XX6 A;  2PY4 A;  2V9X A;  2WE2 A;  3TQZ A;  3MDX A;  2XCD A;  1XS1 A;  3TP1 A;  5ECT A;  3CA9 A;  2WE0 A;  3TPY A;  2OKE A;  3MBQ A;  3GF0 A;  2D4L A;  4OOQ A;  4A6A A;  2OKD A;  3ZF5 A;  3H6D A;  3H6X A;  1F7R A;  4B0H A;  1XS4 A;  1SYL A;  1DUC A;  1F7D A;  2WE1 A;  2Y8C A;  4AOO A;  2J4H A;  3T6Y A;  2XY3 A;  1OGH A;  3TQ3 A;  4APZ 1;  2HR6 A;  1DUT A;  2ZDC A;  1SJN A;  1SIX A;  3ZF3 A;  5CCO A;  4LHR A;  1PKJ A;  2HRM A;  4GK6 A;  5F9K A;  3LQW A;  4OOP A;  1RNJ A;  1F7O A;  3T70 A;  3ZF1 A;  3TPW A;  3ARN A;  1SM8 A;  1Q5H A;  2J4Q A;  2WE3 A;  2R9Q A;  1F7P A;  3TS6 A;  3ZF0 A;  1VYQ A;  4XJC A;  3ZEZ A;  3TTA A;  3ZF4 A;  2Y1T A; 
#chains in the Genus database with same CATH topology
 1F7N A;  4GCY A;  3TPN A;  3TPS A;  2HXB A;  1F7Q A;  1SLH A;  2PC5 A;  3I93 A;  2QLP A;  1RN8 A;  3ZF6 A;  3T60 A;  2YZJ A;  5EDD A;  3TQ5 A;  1DUN A;  1PKK A;  3EHW A;  3F4F A;  2BT1 A;  2OKB A;  2HXD A;  3TRL A;  3P48 A;  1SEH A;  1DUD A;  3TSL A;  4GV8 A;  1TUL A;  2D4N A;  2XCE A;  3ARA A;  2BAZ A;  1Q5U X;  3ZF2 A;  1EU5 A;  2HQU A;  1EUW A;  5CCT A;  4WRK A;  2BSY A;  1SMC A;  1SNF A;  3C3I A;  3LOJ A;  1MQ7 A;  1F7K A;  2D4M A;  2OL0 A;  3C2T A;  2OL1 A;  4DHK A;  3HHQ A;  1XS6 A;  3SO2 A;  1PKH A;  3KM3 A;  1DUP A;  3ECY A;  3HZA A;  3T64 A;  4AO5 A;  3TRN A;  2QXX A;  4AOZ A;  3TQ4 A;  2XX6 A;  2PY4 A;  2V9X A;  2WE2 A;  3TQZ A;  3MDX A;  2XCD A;  1XS1 A;  3TP1 A;  5ECT A;  3CA9 A;  2WE0 A;  3TPY A;  2OKE A;  3MBQ A;  3GF0 A;  2D4L A;  4OOQ A;  4A6A A;  2OKD A;  3ZF5 A;  3H6D A;  3H6X A;  1F7R A;  4B0H A;  1XS4 A;  1SYL A;  1DUC A;  1F7D A;  2WE1 A;  2Y8C A;  4AOO A;  2J4H A;  3T6Y A;  2XY3 A;  1OGH A;  3TQ3 A;  4APZ 1;  2HR6 A;  1DUT A;  2ZDC A;  1SJN A;  1SIX A;  3ZF3 A;  5CCO A;  4LHR A;  1PKJ A;  2HRM A;  4GK6 A;  5F9K A;  3LQW A;  4OOP A;  1RNJ A;  1F7O A;  3T70 A;  3ZF1 A;  3TPW A;  3ARN A;  1SM8 A;  1Q5H A;  2J4Q A;  2WE3 A;  2R9Q A;  1F7P A;  3TS6 A;  3ZF0 A;  1VYQ A;  4XJC A;  3ZEZ A;  3TTA A;  3ZF4 A;  2Y1T A; 
#chains in the Genus database with same CATH homology
 1F7N A;  4GCY A;  3TPN A;  3TPS A;  2HXB A;  1F7Q A;  1SLH A;  2PC5 A;  3I93 A;  2QLP A;  1RN8 A;  3ZF6 A;  3T60 A;  2YZJ A;  5EDD A;  3TQ5 A;  1DUN A;  1PKK A;  3EHW A;  3F4F A;  2BT1 A;  2OKB A;  2HXD A;  3TRL A;  3P48 A;  1SEH A;  1DUD A;  3TSL A;  4GV8 A;  2D4N A;  2XCE A;  3ARA A;  2BAZ A;  1Q5U X;  3ZF2 A;  1EU5 A;  2HQU A;  1EUW A;  5CCT A;  4WRK A;  2BSY A;  1SMC A;  1SNF A;  3C3I A;  3LOJ A;  1MQ7 A;  1F7K A;  2D4M A;  2OL0 A;  3C2T A;  2OL1 A;  4DHK A;  3HHQ A;  1XS6 A;  3SO2 A;  1PKH A;  3KM3 A;  1DUP A;  3ECY A;  3HZA A;  3T64 A;  4AO5 A;  3TRN A;  2QXX A;  4AOZ A;  3TQ4 A;  2XX6 A;  2PY4 A;  2V9X A;  2WE2 A;  3TQZ A;  3MDX A;  2XCD A;  1XS1 A;  3TP1 A;  5ECT A;  3CA9 A;  2WE0 A;  3TPY A;  2OKE A;  3MBQ A;  3GF0 A;  2D4L A;  4OOQ A;  4A6A A;  2OKD A;  3ZF5 A;  3H6D A;  3H6X A;  1F7R A;  4B0H A;  1XS4 A;  1SYL A;  1DUC A;  1F7D A;  2WE1 A;  2Y8C A;  4AOO A;  2J4H A;  3T6Y A;  2XY3 A;  1OGH A;  3TQ3 A;  4APZ 1;  2HR6 A;  1DUT A;  2ZDC A;  1SJN A;  1SIX A;  3ZF3 A;  5CCO A;  4LHR A;  1PKJ A;  2HRM A;  4GK6 A;  5F9K A;  3LQW A;  4OOP A;  1RNJ A;  1F7O A;  3T70 A;  3ZF1 A;  3TPW A;  3ARN A;  1SM8 A;  1Q5H A;  2J4Q A;  2WE3 A;  2R9Q A;  1F7P A;  3TS6 A;  3ZF0 A;  1VYQ A;  4XJC A;  3ZEZ A;  3TTA A;  3ZF4 A;  2Y1T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4AO5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations