4AOOA

B. subtilis dutpase yncf in complex with du ppi and mg in h32
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
143
structure length
143
Chain Sequence
TMQIKIKYLDETQTRISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPAVELVEVEHLGNEDRGGLGSTGTK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (6-9)TI5 (87-90)EMPTYTI1 (11-14)TII3 (105-108)S10 (108-117)TVIII1 (23-26)S2 (26-30)S4 (40-51)S9 (102-104)S3 (34-36)TIV3 (98-101)TII1 (37-40)TII2 (53-56)TI4 (82-85)S5 (56-62)S7 (79-81)S6 (72-74)TIV1 (76-79)AH1 (65-70)S8 (92-98)TIV2 (83-86)TI'1 (137-140)TI6 (139-142)TI2 (20-23)TI3 (74-77)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Bacillus subtilis
publication title Tying Down the Arm in Bacillus Dutpase: Structure and Mechanism
pubmed doi rcsb
molecule keywords PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YN
total genus 23
structure length 143
sequence length 143
chains with identical sequence B, C, D
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2012-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 4aooA00
1DUPA 1PKJA 1DUDA 3C3IA 2HXDA 1F7RA 4XJCA 1XS6A 2PY4A 1RN8A 3GF0A 2YZJA 1PKKA 3TPNA 3TTAA 2BT1A 3KM3A 3TRLA 2XY3A 2XCDA 1F7QA 3TQZA 4GK6A 2OL0A 3C2TA 2HQUA 1F7KA 5EDDA 1SJNA 4A6AA 2WE3A 1Q5UX 5CCOA 3ARAA 1F7DA 3T6YA 3TP1A 4OOQA 2V9XA 4LHRA 2J4QA 4DHKA 3TRNA 3P48A 3ECYA 3MBQA 1VYQA 3ZEZA 3MDXA 3LQWA 5F9KA 3TPWA 3ZF0A 1SM8A 1SNFA 2HXBA 2WE2A 1DUNA 1EUWA 1SEHA 1DUTA 3LOJA 3CA9A 1SMCA 2OL1A 2OKBA 2Y8CA 4OOPA 2ZDCA 2QXXA 3H6XA 1Q5HA 1SYLA 1OGHA 2D4LA 3ZF1A 1F7NA 1EU5A 4GCYA 3ZF4A 1DUCA 3EHWA 4AO5A 1SIXA 2D4NA 3TQ4A 4APZ1 1XS4A 2WE0A 3I93A 3TS6A 3TSLA 3H6DA 4B0HA 1XS1A 2BSYA 2XX6A 2HRMA 3T60A 2BAZA 3ZF6A 1F7PA 3TQ3A 2J4HA 5ECTA 2QLPA 4AOZA 2XCEA 4WRKA 3SO2A 2R9QA 3TPSA 2OKEA 1RNJA 1SLHA 1MQ7A 4GV8A 3ARNA 3TQ5A 3HHQA 2D4MA 2PC5A 4AOOA 5CCTA 3ZF3A 2WE1A 2HR6A 3F4FA 3TPYA 3ZF5A 1F7OA 2OKDA 3HZAA 1PKHA 3ZF2A 3T64A 2Y1TA 3T70A
chains in the Genus database with same CATH superfamily
1DUPA 1PKJA 1DUDA 3C3IA 2HXDA 1F7RA 4XJCA 1XS6A 2PY4A 1RN8A 3GF0A 2YZJA 1PKKA 3TPNA 3TTAA 2BT1A 3KM3A 3TRLA 2XY3A 2XCDA 1F7QA 3TQZA 4GK6A 2OL0A 3C2TA 2HQUA 1F7KA 5EDDA 1SJNA 4A6AA 2WE3A 1Q5UX 5CCOA 3ARAA 1F7DA 3T6YA 3TP1A 1TULA 4OOQA 2V9XA 4LHRA 2J4QA 4DHKA 3TRNA 3P48A 3ECYA 3MBQA 1VYQA 3ZEZA 3MDXA 3LQWA 5F9KA 3TPWA 3ZF0A 1SM8A 1SNFA 2HXBA 2WE2A 1DUNA 1EUWA 1SEHA 1DUTA 3LOJA 3CA9A 1SMCA 2OL1A 2OKBA 2Y8CA 4OOPA 2ZDCA 2QXXA 3H6XA 1Q5HA 1SYLA 1OGHA 2D4LA 3ZF1A 1F7NA 1EU5A 4GCYA 3ZF4A 1DUCA 3EHWA 4AO5A 1SIXA 2D4NA 3TQ4A 4APZ1 1XS4A 2WE0A 3I93A 3TS6A 3TSLA 3H6DA 4B0HA 1XS1A 2BSYA 2XX6A 2HRMA 3T60A 2BAZA 3ZF6A 1F7PA 3TQ3A 2J4HA 5ECTA 2QLPA 4AOZA 2XCEA 4WRKA 3SO2A 2R9QA 3TPSA 2OKEA 1RNJA 1SLHA 1MQ7A 4GV8A 3ARNA 3TQ5A 3HHQA 2D4MA 2PC5A 4AOOA 5CCTA 3ZF3A 2WE1A 2HR6A 3F4FA 3TPYA 3ZF5A 1F7OA 2OKDA 3HZAA 1PKHA 3ZF2A 3T64A 2Y1TA 3T70A
chains in the Genus database with same CATH topology
1DUPA 1PKJA 1DUDA 3C3IA 2HXDA 1F7RA 4XJCA 1XS6A 2PY4A 1RN8A 3GF0A 2YZJA 1PKKA 3TPNA 3TTAA 2BT1A 3KM3A 3TRLA 2XY3A 2XCDA 1F7QA 3TQZA 4GK6A 2OL0A 3C2TA 2HQUA 1F7KA 5EDDA 1SJNA 4A6AA 2WE3A 1Q5UX 5CCOA 3ARAA 1F7DA 3T6YA 3TP1A 4OOQA 2V9XA 4LHRA 2J4QA 4DHKA 3TRNA 3P48A 3ECYA 3MBQA 1VYQA 3ZEZA 3MDXA 3LQWA 5F9KA 3TPWA 3ZF0A 1SM8A 1SNFA 2HXBA 2WE2A 1DUNA 1EUWA 1SEHA 1DUTA 3LOJA 3CA9A 1SMCA 2OL1A 2OKBA 2Y8CA 4OOPA 2ZDCA 2QXXA 3H6XA 1Q5HA 1SYLA 1OGHA 2D4LA 3ZF1A 1F7NA 1EU5A 4GCYA 3ZF4A 1DUCA 3EHWA 4AO5A 1SIXA 2D4NA 3TQ4A 4APZ1 1XS4A 2WE0A 3I93A 3TS6A 3TSLA 3H6DA 4B0HA 1XS1A 2BSYA 2XX6A 2HRMA 3T60A 2BAZA 3ZF6A 1F7PA 3TQ3A 2J4HA 5ECTA 2QLPA 4AOZA 2XCEA 4WRKA 3SO2A 2R9QA 3TPSA 2OKEA 1RNJA 1SLHA 1MQ7A 4GV8A 3ARNA 3TQ5A 3HHQA 2D4MA 2PC5A 4AOOA 5CCTA 3ZF3A 2WE1A 2HR6A 3F4FA 3TPYA 3ZF5A 1F7OA 2OKDA 3HZAA 1PKHA 3ZF2A 3T64A 2Y1TA 3T70A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DUP A;  1PKJ A;  1DUD A;  3C3I A;  2HXD A;  1F7R A;  4XJC A;  1XS6 A;  2PY4 A;  1RN8 A;  3GF0 A;  2YZJ A;  1PKK A;  3TPN A;  3TTA A;  2BT1 A;  3KM3 A;  3TRL A;  2XY3 A;  2XCD A;  1F7Q A;  3TQZ A;  4GK6 A;  2OL0 A;  3C2T A;  2HQU A;  1F7K A;  5EDD A;  1SJN A;  4A6A A;  2WE3 A;  1Q5U X;  5CCO A;  3ARA A;  1F7D A;  3T6Y A;  3TP1 A;  4OOQ A;  2V9X A;  4LHR A;  2J4Q A;  4DHK A;  3TRN A;  3P48 A;  3ECY A;  3MBQ A;  1VYQ A;  3ZEZ A;  3MDX A;  3LQW A;  5F9K A;  3TPW A;  3ZF0 A;  1SM8 A;  1SNF A;  2HXB A;  2WE2 A;  1DUN A;  1EUW A;  1SEH A;  1DUT A;  3LOJ A;  3CA9 A;  1SMC A;  2OL1 A;  2OKB A;  2Y8C A;  4OOP A;  2ZDC A;  2QXX A;  3H6X A;  1Q5H A;  1SYL A;  1OGH A;  2D4L A;  3ZF1 A;  1F7N A;  1EU5 A;  4GCY A;  3ZF4 A;  1DUC A;  3EHW A;  4AO5 A;  1SIX A;  2D4N A;  3TQ4 A;  4APZ 1;  1XS4 A;  2WE0 A;  3I93 A;  3TS6 A;  3TSL A;  3H6D A;  4B0H A;  1XS1 A;  2BSY A;  2XX6 A;  2HRM A;  3T60 A;  2BAZ A;  3ZF6 A;  1F7P A;  3TQ3 A;  2J4H A;  5ECT A;  2QLP A;  4AOZ A;  2XCE A;  4WRK A;  3SO2 A;  2R9Q A;  3TPS A;  2OKE A;  1RNJ A;  1SLH A;  1MQ7 A;  4GV8 A;  3ARN A;  3TQ5 A;  3HHQ A;  2D4M A;  2PC5 A;  4AOO A;  5CCT A;  3ZF3 A;  2WE1 A;  2HR6 A;  3F4F A;  3TPY A;  3ZF5 A;  1F7O A;  2OKD A;  3HZA A;  1PKH A;  3ZF2 A;  3T64 A;  2Y1T A;  3T70 A; 
#chains in the Genus database with same CATH topology
 1DUP A;  1PKJ A;  1DUD A;  3C3I A;  2HXD A;  1F7R A;  4XJC A;  1XS6 A;  2PY4 A;  1RN8 A;  3GF0 A;  2YZJ A;  1PKK A;  3TPN A;  3TTA A;  2BT1 A;  3KM3 A;  3TRL A;  2XY3 A;  2XCD A;  1F7Q A;  3TQZ A;  4GK6 A;  2OL0 A;  3C2T A;  2HQU A;  1F7K A;  5EDD A;  1SJN A;  4A6A A;  2WE3 A;  1Q5U X;  5CCO A;  3ARA A;  1F7D A;  3T6Y A;  3TP1 A;  1TUL A;  4OOQ A;  2V9X A;  4LHR A;  2J4Q A;  4DHK A;  3TRN A;  3P48 A;  3ECY A;  3MBQ A;  1VYQ A;  3ZEZ A;  3MDX A;  3LQW A;  5F9K A;  3TPW A;  3ZF0 A;  1SM8 A;  1SNF A;  2HXB A;  2WE2 A;  1DUN A;  1EUW A;  1SEH A;  1DUT A;  3LOJ A;  3CA9 A;  1SMC A;  2OL1 A;  2OKB A;  2Y8C A;  4OOP A;  2ZDC A;  2QXX A;  3H6X A;  1Q5H A;  1SYL A;  1OGH A;  2D4L A;  3ZF1 A;  1F7N A;  1EU5 A;  4GCY A;  3ZF4 A;  1DUC A;  3EHW A;  4AO5 A;  1SIX A;  2D4N A;  3TQ4 A;  4APZ 1;  1XS4 A;  2WE0 A;  3I93 A;  3TS6 A;  3TSL A;  3H6D A;  4B0H A;  1XS1 A;  2BSY A;  2XX6 A;  2HRM A;  3T60 A;  2BAZ A;  3ZF6 A;  1F7P A;  3TQ3 A;  2J4H A;  5ECT A;  2QLP A;  4AOZ A;  2XCE A;  4WRK A;  3SO2 A;  2R9Q A;  3TPS A;  2OKE A;  1RNJ A;  1SLH A;  1MQ7 A;  4GV8 A;  3ARN A;  3TQ5 A;  3HHQ A;  2D4M A;  2PC5 A;  4AOO A;  5CCT A;  3ZF3 A;  2WE1 A;  2HR6 A;  3F4F A;  3TPY A;  3ZF5 A;  1F7O A;  2OKD A;  3HZA A;  1PKH A;  3ZF2 A;  3T64 A;  2Y1T A;  3T70 A; 
#chains in the Genus database with same CATH homology
 1DUP A;  1PKJ A;  1DUD A;  3C3I A;  2HXD A;  1F7R A;  4XJC A;  1XS6 A;  2PY4 A;  1RN8 A;  3GF0 A;  2YZJ A;  1PKK A;  3TPN A;  3TTA A;  2BT1 A;  3KM3 A;  3TRL A;  2XY3 A;  2XCD A;  1F7Q A;  3TQZ A;  4GK6 A;  2OL0 A;  3C2T A;  2HQU A;  1F7K A;  5EDD A;  1SJN A;  4A6A A;  2WE3 A;  1Q5U X;  5CCO A;  3ARA A;  1F7D A;  3T6Y A;  3TP1 A;  4OOQ A;  2V9X A;  4LHR A;  2J4Q A;  4DHK A;  3TRN A;  3P48 A;  3ECY A;  3MBQ A;  1VYQ A;  3ZEZ A;  3MDX A;  3LQW A;  5F9K A;  3TPW A;  3ZF0 A;  1SM8 A;  1SNF A;  2HXB A;  2WE2 A;  1DUN A;  1EUW A;  1SEH A;  1DUT A;  3LOJ A;  3CA9 A;  1SMC A;  2OL1 A;  2OKB A;  2Y8C A;  4OOP A;  2ZDC A;  2QXX A;  3H6X A;  1Q5H A;  1SYL A;  1OGH A;  2D4L A;  3ZF1 A;  1F7N A;  1EU5 A;  4GCY A;  3ZF4 A;  1DUC A;  3EHW A;  4AO5 A;  1SIX A;  2D4N A;  3TQ4 A;  4APZ 1;  1XS4 A;  2WE0 A;  3I93 A;  3TS6 A;  3TSL A;  3H6D A;  4B0H A;  1XS1 A;  2BSY A;  2XX6 A;  2HRM A;  3T60 A;  2BAZ A;  3ZF6 A;  1F7P A;  3TQ3 A;  2J4H A;  5ECT A;  2QLP A;  4AOZ A;  2XCE A;  4WRK A;  3SO2 A;  2R9Q A;  3TPS A;  2OKE A;  1RNJ A;  1SLH A;  1MQ7 A;  4GV8 A;  3ARN A;  3TQ5 A;  3HHQ A;  2D4M A;  2PC5 A;  4AOO A;  5CCT A;  3ZF3 A;  2WE1 A;  2HR6 A;  3F4F A;  3TPY A;  3ZF5 A;  1F7O A;  2OKD A;  3HZA A;  1PKH A;  3ZF2 A;  3T64 A;  2Y1T A;  3T70 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.