4APZ1

Structure of b. subtilis genomic dutpase yncf in complex with du, ppi and mg in p1
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
142
structure length
142
Chain Sequence
MQIKIKYLDETQTRISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPAVELVEVEHLGNEDRGGLGSTGTK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (7-9)S4 (40-50)S8 (102-104)TI'1 (11-14)S2 (26-30)S9 (108-117)TVIII1 (23-26)TII'2 (105-108)TII1 (53-56)S6 (79-81)S5 (56-62)TIV1 (74-77)AH1 (64-69)TIV3 (98-101)TI'2 (87-90)O1 (84-86)S7 (92-98)TI'3 (137-140)TI1 (20-23)S3 (34-36)TII'1 (37-40)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Bacillus subtilis
publication title Tying Down the Arm in Bacillus Dutpase: Structure and Mechanism
pubmed doi rcsb
molecule keywords PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YN
total genus 23
structure length 142
sequence length 142
chains with identical sequence 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2012-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 4apz100
3H6XA 2ZDCA 1OGHA 2QXXA 4GCYA 1SLHA 1SIXA 2OKBA 3SO2A 3ARNA 1SM8A 3ZEZA 1DUNA 2Y1TA 4OOPA 5EDDA 2OL0A 5ECTA 1F7OA 2HXDA 1XS6A 2WE1A 1F7QA 4GV8A 2OL1A 1Q5UX 1F7PA 2HR6A 2XCEA 3TPYA 1PKJA 3T6YA 2BAZA 1F7KA 3I93A 3T64A 3TPNA 1SYLA 1EUWA 3TPSA 3C2TA 1Q5HA 3MDXA 1DUPA 2Y8CA 3TTAA 3TP1A 4AO5A 1DUCA 3ZF0A 2PY4A 3T70A 3ZF3A 3ZF2A 3ARAA 3EHWA 3ECYA 4APZ1 1DUDA 3KM3A 3LQWA 2WE2A 2HRMA 4A6AA 2XX6A 3TQ4A 3TQ3A 2BT1A 1PKKA 2OKDA 1SMCA 1SEHA 3F4FA 3GF0A 1SJNA 3CA9A 5CCTA 1SNFA 3TRNA 1XS1A 3ZF6A 1F7RA 2PC5A 3ZF4A 3MBQA 3TSLA 3TQ5A 3TS6A 2D4NA 2WE3A 2J4HA 2XY3A 1DUTA 4B0HA 2D4MA 4OOQA 1RNJA 4LHRA 3LOJA 1EU5A 2V9XA 1F7NA 2XCDA 3ZF1A 1XS4A 2WE0A 4DHKA 3T60A 4WRKA 3TQZA 5CCOA 2D4LA 3H6DA 2YZJA 2BSYA 2J4QA 1VYQA 1F7DA 3TPWA 3P48A 5F9KA 3C3IA 4AOZA 3ZF5A 2HXBA 4GK6A 2QLPA 2OKEA 1RN8A 4XJCA 3TRLA 2HQUA 1MQ7A 3HZAA 1PKHA 4AOOA 2R9QA 3HHQA
chains in the Genus database with same CATH superfamily
3H6XA 2ZDCA 1OGHA 2QXXA 4GCYA 1SLHA 1SIXA 2OKBA 3SO2A 3ARNA 1SM8A 3ZEZA 1DUNA 2Y1TA 4OOPA 5EDDA 2OL0A 5ECTA 1F7OA 2HXDA 1XS6A 2WE1A 1F7QA 4GV8A 2OL1A 1Q5UX 1F7PA 2HR6A 2XCEA 3TPYA 1PKJA 3T6YA 2BAZA 1F7KA 3I93A 3T64A 3TPNA 1SYLA 1EUWA 3TPSA 3C2TA 1Q5HA 3MDXA 1DUPA 2Y8CA 3TTAA 3TP1A 4AO5A 1DUCA 3ZF0A 2PY4A 3T70A 3ZF3A 3ZF2A 3ARAA 3EHWA 3ECYA 4APZ1 1DUDA 3KM3A 3LQWA 2WE2A 2HRMA 4A6AA 2XX6A 3TQ4A 3TQ3A 2BT1A 1PKKA 2OKDA 1SMCA 1TULA 1SEHA 3F4FA 3GF0A 1SJNA 3CA9A 5CCTA 1SNFA 3TRNA 1XS1A 3ZF6A 1F7RA 2PC5A 3ZF4A 3MBQA 3TSLA 3TQ5A 3TS6A 2D4NA 2WE3A 2J4HA 2XY3A 1DUTA 4B0HA 2D4MA 4OOQA 1RNJA 4LHRA 3LOJA 1EU5A 2V9XA 1F7NA 2XCDA 3ZF1A 1XS4A 2WE0A 4DHKA 3T60A 4WRKA 3TQZA 5CCOA 2D4LA 3H6DA 2YZJA 2BSYA 2J4QA 1VYQA 1F7DA 3TPWA 3P48A 5F9KA 3C3IA 4AOZA 3ZF5A 2HXBA 4GK6A 2QLPA 2OKEA 1RN8A 4XJCA 3TRLA 2HQUA 1MQ7A 3HZAA 1PKHA 4AOOA 2R9QA 3HHQA
chains in the Genus database with same CATH topology
3H6XA 2ZDCA 1OGHA 2QXXA 4GCYA 1SLHA 1SIXA 2OKBA 3SO2A 3ARNA 1SM8A 3ZEZA 1DUNA 2Y1TA 4OOPA 5EDDA 2OL0A 5ECTA 1F7OA 2HXDA 1XS6A 2WE1A 1F7QA 4GV8A 2OL1A 1Q5UX 1F7PA 2HR6A 2XCEA 3TPYA 1PKJA 3T6YA 2BAZA 1F7KA 3I93A 3T64A 3TPNA 1SYLA 1EUWA 3TPSA 3C2TA 1Q5HA 3MDXA 1DUPA 2Y8CA 3TTAA 3TP1A 4AO5A 1DUCA 3ZF0A 2PY4A 3T70A 3ZF3A 3ZF2A 3ARAA 3EHWA 3ECYA 4APZ1 1DUDA 3KM3A 3LQWA 2WE2A 2HRMA 4A6AA 2XX6A 3TQ4A 3TQ3A 2BT1A 1PKKA 2OKDA 1SMCA 1SEHA 3F4FA 3GF0A 1SJNA 3CA9A 5CCTA 1SNFA 3TRNA 1XS1A 3ZF6A 1F7RA 2PC5A 3ZF4A 3MBQA 3TSLA 3TQ5A 3TS6A 2D4NA 2WE3A 2J4HA 2XY3A 1DUTA 4B0HA 2D4MA 4OOQA 1RNJA 4LHRA 3LOJA 1EU5A 2V9XA 1F7NA 2XCDA 3ZF1A 1XS4A 2WE0A 4DHKA 3T60A 4WRKA 3TQZA 5CCOA 2D4LA 3H6DA 2YZJA 2BSYA 2J4QA 1VYQA 1F7DA 3TPWA 3P48A 5F9KA 3C3IA 4AOZA 3ZF5A 2HXBA 4GK6A 2QLPA 2OKEA 1RN8A 4XJCA 3TRLA 2HQUA 1MQ7A 3HZAA 1PKHA 4AOOA 2R9QA 3HHQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H6X A;  2ZDC A;  1OGH A;  2QXX A;  4GCY A;  1SLH A;  1SIX A;  2OKB A;  3SO2 A;  3ARN A;  1SM8 A;  3ZEZ A;  1DUN A;  2Y1T A;  4OOP A;  5EDD A;  2OL0 A;  5ECT A;  1F7O A;  2HXD A;  1XS6 A;  2WE1 A;  1F7Q A;  4GV8 A;  2OL1 A;  1Q5U X;  1F7P A;  2HR6 A;  2XCE A;  3TPY A;  1PKJ A;  3T6Y A;  2BAZ A;  1F7K A;  3I93 A;  3T64 A;  3TPN A;  1SYL A;  1EUW A;  3TPS A;  3C2T A;  1Q5H A;  3MDX A;  1DUP A;  2Y8C A;  3TTA A;  3TP1 A;  4AO5 A;  1DUC A;  3ZF0 A;  2PY4 A;  3T70 A;  3ZF3 A;  3ZF2 A;  3ARA A;  3EHW A;  3ECY A;  4APZ 1;  1DUD A;  3KM3 A;  3LQW A;  2WE2 A;  2HRM A;  4A6A A;  2XX6 A;  3TQ4 A;  3TQ3 A;  2BT1 A;  1PKK A;  2OKD A;  1SMC A;  1SEH A;  3F4F A;  3GF0 A;  1SJN A;  3CA9 A;  5CCT A;  1SNF A;  3TRN A;  1XS1 A;  3ZF6 A;  1F7R A;  2PC5 A;  3ZF4 A;  3MBQ A;  3TSL A;  3TQ5 A;  3TS6 A;  2D4N A;  2WE3 A;  2J4H A;  2XY3 A;  1DUT A;  4B0H A;  2D4M A;  4OOQ A;  1RNJ A;  4LHR A;  3LOJ A;  1EU5 A;  2V9X A;  1F7N A;  2XCD A;  3ZF1 A;  1XS4 A;  2WE0 A;  4DHK A;  3T60 A;  4WRK A;  3TQZ A;  5CCO A;  2D4L A;  3H6D A;  2YZJ A;  2BSY A;  2J4Q A;  1VYQ A;  1F7D A;  3TPW A;  3P48 A;  5F9K A;  3C3I A;  4AOZ A;  3ZF5 A;  2HXB A;  4GK6 A;  2QLP A;  2OKE A;  1RN8 A;  4XJC A;  3TRL A;  2HQU A;  1MQ7 A;  3HZA A;  1PKH A;  4AOO A;  2R9Q A;  3HHQ A; 
#chains in the Genus database with same CATH topology
 3H6X A;  2ZDC A;  1OGH A;  2QXX A;  4GCY A;  1SLH A;  1SIX A;  2OKB A;  3SO2 A;  3ARN A;  1SM8 A;  3ZEZ A;  1DUN A;  2Y1T A;  4OOP A;  5EDD A;  2OL0 A;  5ECT A;  1F7O A;  2HXD A;  1XS6 A;  2WE1 A;  1F7Q A;  4GV8 A;  2OL1 A;  1Q5U X;  1F7P A;  2HR6 A;  2XCE A;  3TPY A;  1PKJ A;  3T6Y A;  2BAZ A;  1F7K A;  3I93 A;  3T64 A;  3TPN A;  1SYL A;  1EUW A;  3TPS A;  3C2T A;  1Q5H A;  3MDX A;  1DUP A;  2Y8C A;  3TTA A;  3TP1 A;  4AO5 A;  1DUC A;  3ZF0 A;  2PY4 A;  3T70 A;  3ZF3 A;  3ZF2 A;  3ARA A;  3EHW A;  3ECY A;  4APZ 1;  1DUD A;  3KM3 A;  3LQW A;  2WE2 A;  2HRM A;  4A6A A;  2XX6 A;  3TQ4 A;  3TQ3 A;  2BT1 A;  1PKK A;  2OKD A;  1SMC A;  1TUL A;  1SEH A;  3F4F A;  3GF0 A;  1SJN A;  3CA9 A;  5CCT A;  1SNF A;  3TRN A;  1XS1 A;  3ZF6 A;  1F7R A;  2PC5 A;  3ZF4 A;  3MBQ A;  3TSL A;  3TQ5 A;  3TS6 A;  2D4N A;  2WE3 A;  2J4H A;  2XY3 A;  1DUT A;  4B0H A;  2D4M A;  4OOQ A;  1RNJ A;  4LHR A;  3LOJ A;  1EU5 A;  2V9X A;  1F7N A;  2XCD A;  3ZF1 A;  1XS4 A;  2WE0 A;  4DHK A;  3T60 A;  4WRK A;  3TQZ A;  5CCO A;  2D4L A;  3H6D A;  2YZJ A;  2BSY A;  2J4Q A;  1VYQ A;  1F7D A;  3TPW A;  3P48 A;  5F9K A;  3C3I A;  4AOZ A;  3ZF5 A;  2HXB A;  4GK6 A;  2QLP A;  2OKE A;  1RN8 A;  4XJC A;  3TRL A;  2HQU A;  1MQ7 A;  3HZA A;  1PKH A;  4AOO A;  2R9Q A;  3HHQ A; 
#chains in the Genus database with same CATH homology
 3H6X A;  2ZDC A;  1OGH A;  2QXX A;  4GCY A;  1SLH A;  1SIX A;  2OKB A;  3SO2 A;  3ARN A;  1SM8 A;  3ZEZ A;  1DUN A;  2Y1T A;  4OOP A;  5EDD A;  2OL0 A;  5ECT A;  1F7O A;  2HXD A;  1XS6 A;  2WE1 A;  1F7Q A;  4GV8 A;  2OL1 A;  1Q5U X;  1F7P A;  2HR6 A;  2XCE A;  3TPY A;  1PKJ A;  3T6Y A;  2BAZ A;  1F7K A;  3I93 A;  3T64 A;  3TPN A;  1SYL A;  1EUW A;  3TPS A;  3C2T A;  1Q5H A;  3MDX A;  1DUP A;  2Y8C A;  3TTA A;  3TP1 A;  4AO5 A;  1DUC A;  3ZF0 A;  2PY4 A;  3T70 A;  3ZF3 A;  3ZF2 A;  3ARA A;  3EHW A;  3ECY A;  4APZ 1;  1DUD A;  3KM3 A;  3LQW A;  2WE2 A;  2HRM A;  4A6A A;  2XX6 A;  3TQ4 A;  3TQ3 A;  2BT1 A;  1PKK A;  2OKD A;  1SMC A;  1SEH A;  3F4F A;  3GF0 A;  1SJN A;  3CA9 A;  5CCT A;  1SNF A;  3TRN A;  1XS1 A;  3ZF6 A;  1F7R A;  2PC5 A;  3ZF4 A;  3MBQ A;  3TSL A;  3TQ5 A;  3TS6 A;  2D4N A;  2WE3 A;  2J4H A;  2XY3 A;  1DUT A;  4B0H A;  2D4M A;  4OOQ A;  1RNJ A;  4LHR A;  3LOJ A;  1EU5 A;  2V9X A;  1F7N A;  2XCD A;  3ZF1 A;  1XS4 A;  2WE0 A;  4DHK A;  3T60 A;  4WRK A;  3TQZ A;  5CCO A;  2D4L A;  3H6D A;  2YZJ A;  2BSY A;  2J4Q A;  1VYQ A;  1F7D A;  3TPW A;  3P48 A;  5F9K A;  3C3I A;  4AOZ A;  3ZF5 A;  2HXB A;  4GK6 A;  2QLP A;  2OKE A;  1RN8 A;  4XJC A;  3TRL A;  2HQU A;  1MQ7 A;  3HZA A;  1PKH A;  4AOO A;  2R9Q A;  3HHQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.