4CMW | Genus

Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	295
structure length	288
Chain Sequence	NLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Molecular Profiling of Mycobacterium Tuberculosis Identifies Tuberculosinyl Nucleoside Products of the Virulence-Associated Enzyme Rv3378C. pubmed doi rcsb
molecule keywords	DITERPENE SYNTHASE
molecule tags	Hydrolase
source organism	Mycobacterium tuberculosis
total genus	89
structure length	288
sequence length	295
chains with identical sequence	B
ec nomenclature	ec 3.1.7.8: Tuberculosinol synthase.
pdb deposition date	2014-01-18

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	4cmwA01

2E9DA 3SGVA 5CQJA 2E9AA 3WYIA 1X07A 3WQLA 1X08A 4ONCA 2VG0A 5HXQA 3WQMA 3WQNA 4CMXA 5CQBA 3TH8A 2VG1A 5HXNA 4H2MA 1X06A 3QASA 4H38A 4U82A 4H2OA 5HXTA 3UGSA 4KT8A 4H2JA 5HC8A 1F75A 4Q9OA 5KH2A 5KH5A 2E9CA 2VG4A 4H8EA 1UEHA 5HXPA 4H3AA 3SH0A 2E98A 2D2RA 1JP3A 5HC6A 1X09A 2DTNA 3WYJA 5KH4A 1V7UA 5HXOA 3WQKA 2VFWA 4CMVA 4H3CA 2VG3A 5HC7A 2VG2A 2E99A 3SGXA 4CMWA 3SGTA 4Q9MA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2E9D A;  3SGV A;  5CQJ A;  2E9A A;  3WYI A;  1X07 A;  3WQL A;  1X08 A;  4ONC A;  2VG0 A;  5HXQ A;  3WQM A;  3WQN A;  4CMX A;  5CQB A;  3TH8 A;  2VG1 A;  5HXN A;  4H2M A;  1X06 A;  3QAS A;  4H38 A;  4U82 A;  4H2O A;  5HXT A;  3UGS A;  4KT8 A;  4H2J A;  5HC8 A;  1F75 A;  4Q9O A;  5KH2 A;  5KH5 A;  2E9C A;  2VG4 A;  4H8E A;  1UEH A;  5HXP A;  4H3A A;  3SH0 A;  2E98 A;  2D2R A;  1JP3 A;  5HC6 A;  1X09 A;  2DTN A;  3WYJ A;  5KH4 A;  1V7U A;  5HXO A;  3WQK A;  2VFW A;  4CMV A;  4H3C A;  2VG3 A;  5HC7 A;  2VG2 A;  2E99 A;  3SGX A;  4CMW A;  3SGT A;  4Q9M A; 
#chains in the Genus database with same CATH topology
 2E9D A;  3SGV A;  5CQJ A;  2E9A A;  3WYI A;  1X07 A;  3WQL A;  1X08 A;  4ONC A;  2VG0 A;  5HXQ A;  3WQM A;  3WQN A;  4CMX A;  5CQB A;  3TH8 A;  2VG1 A;  5HXN A;  4H2M A;  1X06 A;  3QAS A;  4H38 A;  4U82 A;  4H2O A;  5HXT A;  3UGS A;  4KT8 A;  4H2J A;  5HC8 A;  1F75 A;  4Q9O A;  5KH2 A;  5KH5 A;  2E9C A;  2VG4 A;  4H8E A;  1UEH A;  5HXP A;  4H3A A;  3SH0 A;  2E98 A;  2D2R A;  1JP3 A;  5HC6 A;  1X09 A;  2DTN A;  3WYJ A;  5KH4 A;  1V7U A;  5HXO A;  3WQK A;  2VFW A;  4CMV A;  4H3C A;  2VG3 A;  5HC7 A;  2VG2 A;  2E99 A;  3SGX A;  4CMW A;  3SGT A;  4Q9M A; 
#chains in the Genus database with same CATH homology
 2E9D A;  3SGV A;  5CQJ A;  2E9A A;  3WYI A;  1X07 A;  3WQL A;  1X08 A;  4ONC A;  2VG0 A;  5HXQ A;  3WQM A;  3WQN A;  4CMX A;  5CQB A;  3TH8 A;  2VG1 A;  5HXN A;  4H2M A;  1X06 A;  3QAS A;  4H38 A;  4U82 A;  4H2O A;  5HXT A;  3UGS A;  4KT8 A;  4H2J A;  5HC8 A;  1F75 A;  4Q9O A;  5KH2 A;  5KH5 A;  2E9C A;  2VG4 A;  4H8E A;  1UEH A;  5HXP A;  4H3A A;  3SH0 A;  2E98 A;  2D2R A;  1JP3 A;  5HC6 A;  1X09 A;  2DTN A;  3WYJ A;  5KH4 A;  1V7U A;  5HXO A;  3WQK A;  2VFW A;  4CMV A;  4H3C A;  2VG3 A;  5HC7 A;  2VG2 A;  2E99 A;  3SGX A;  4CMW A;  3SGT A;  4Q9M A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4CMWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN