4CMX | Genus

Total Genus 96

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	96
sequence length	293
structure length	293
Chain Sequence	VSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 293 atoms

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293 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Molecular Profiling of Mycobacterium Tuberculosis Identifies Tuberculosinyl Nucleoside Products of the Virulence-Associated Enzyme Rv3378C. pubmed doi rcsb
molecule keywords	RV3378C
molecule tags	Nuclear protein
source organism	Mycobacterium tuberculosis
total genus	96
structure length	293
sequence length	293
chains with identical sequence	B
ec nomenclature	ec 3.1.7.8: Tuberculosinol synthase.
pdb deposition date	2014-01-18

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	4cmxA01

4H3AA 2VG1A 2E98A 5HC7A 3WYIA 5HXQA 5HXOA 5KH5A 3SGVA 5KH4A 2DTNA 4H3CA 4H8EA 2D2RA 5HXPA 5HC8A 2VG4A 3SGTA 3WQKA 3WYJA 4Q9MA 1V7UA 4Q9OA 3WQMA 1UEHA 2VG3A 1JP3A 5CQJA 2VG0A 4CMWA 3SH0A 1X09A 4CMVA 2VG2A 4U82A 3SGXA 3TH8A 5CQBA 3UGSA 1F75A 3QASA 2E99A 5HXNA 4CMXA 4KT8A 3WQLA 2E9DA 1X08A 2E9AA 2VFWA 4H2JA 2E9CA 5HC6A 4H2OA 3WQNA 4H2MA 5KH2A 1X06A 4ONCA 5HXTA 1X07A 4H38A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4H3A A;  2VG1 A;  2E98 A;  5HC7 A;  3WYI A;  5HXQ A;  5HXO A;  5KH5 A;  3SGV A;  5KH4 A;  2DTN A;  4H3C A;  4H8E A;  2D2R A;  5HXP A;  5HC8 A;  2VG4 A;  3SGT A;  3WQK A;  3WYJ A;  4Q9M A;  1V7U A;  4Q9O A;  3WQM A;  1UEH A;  2VG3 A;  1JP3 A;  5CQJ A;  2VG0 A;  4CMW A;  3SH0 A;  1X09 A;  4CMV A;  2VG2 A;  4U82 A;  3SGX A;  3TH8 A;  5CQB A;  3UGS A;  1F75 A;  3QAS A;  2E99 A;  5HXN A;  4CMX A;  4KT8 A;  3WQL A;  2E9D A;  1X08 A;  2E9A A;  2VFW A;  4H2J A;  2E9C A;  5HC6 A;  4H2O A;  3WQN A;  4H2M A;  5KH2 A;  1X06 A;  4ONC A;  5HXT A;  1X07 A;  4H38 A; 
#chains in the Genus database with same CATH topology
 4H3A A;  2VG1 A;  2E98 A;  5HC7 A;  3WYI A;  5HXQ A;  5HXO A;  5KH5 A;  3SGV A;  5KH4 A;  2DTN A;  4H3C A;  4H8E A;  2D2R A;  5HXP A;  5HC8 A;  2VG4 A;  3SGT A;  3WQK A;  3WYJ A;  4Q9M A;  1V7U A;  4Q9O A;  3WQM A;  1UEH A;  2VG3 A;  1JP3 A;  5CQJ A;  2VG0 A;  4CMW A;  3SH0 A;  1X09 A;  4CMV A;  2VG2 A;  4U82 A;  3SGX A;  3TH8 A;  5CQB A;  3UGS A;  1F75 A;  3QAS A;  2E99 A;  5HXN A;  4CMX A;  4KT8 A;  3WQL A;  2E9D A;  1X08 A;  2E9A A;  2VFW A;  4H2J A;  2E9C A;  5HC6 A;  4H2O A;  3WQN A;  4H2M A;  5KH2 A;  1X06 A;  4ONC A;  5HXT A;  1X07 A;  4H38 A; 
#chains in the Genus database with same CATH homology
 4H3A A;  2VG1 A;  2E98 A;  5HC7 A;  3WYI A;  5HXQ A;  5HXO A;  5KH5 A;  3SGV A;  5KH4 A;  2DTN A;  4H3C A;  4H8E A;  2D2R A;  5HXP A;  5HC8 A;  2VG4 A;  3SGT A;  3WQK A;  3WYJ A;  4Q9M A;  1V7U A;  4Q9O A;  3WQM A;  1UEH A;  2VG3 A;  1JP3 A;  5CQJ A;  2VG0 A;  4CMW A;  3SH0 A;  1X09 A;  4CMV A;  2VG2 A;  4U82 A;  3SGX A;  3TH8 A;  5CQB A;  3UGS A;  1F75 A;  3QAS A;  2E99 A;  5HXN A;  4CMX A;  4KT8 A;  3WQL A;  2E9D A;  1X08 A;  2E9A A;  2VFW A;  4H2J A;  2E9C A;  5HC6 A;  4H2O A;  3WQN A;  4H2M A;  5KH2 A;  1X06 A;  4ONC A;  5HXT A;  1X07 A;  4H38 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4CMXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN