4EGD | Genus

Total Genus 60

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	60
sequence length	227
structure length	221
Chain Sequence	GRNAQIKDTFNQTLKLYPTKNLDDFYDKEGFRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMTPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFVQYGNFKDINDYKDGDISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSRSLEFTFVENKEENIYFTDSVQYTPSE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 221 atoms

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221 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	1.85 Angstrom crystal structure of native hypothetical protein SAOUHSC_02783 from Staphylococcus aureus rcsb
molecule keywords	Uncharacterized protein SAOUHSC_02783
molecule tags	Unknown function
source organism	Staphylococcus aureus subsp. aureus
total genus	60
structure length	221
sequence length	227
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-03-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04507	DUF576	Csa1 family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.40	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	outer membrane lipoprotein receptor (LolB), chain A	4egdA00

4EGDA 4EG9A
chains in the Genus database with same CATH superfamily

4QA8A 2V43A 1IWNA 3WJVA 3BUUA 4Z48A 1UA8A 2ZF3A 2W7QA 3MHAA 3MH8A 4KI3A 3M4WA 3WJUA 4ZRAA 3WJTA 3BMZA 2ZPCA 2ZF4A 4EGDA 1IWLA 4MXTA 3KSNA 2BYOA 3MH9A 2YZYA 3BK5A 2V42A 2ZPDA 4EG9A 1IWMA 2P4BA
chains in the Genus database with same CATH topology

4QA8A 3MH8A 2BYOA 3BMZA 3MH9A 2ZF4A 4EGDA 4EG9A 2ZF3A 4ZRAA 3MHAA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4EGD A;  4EG9 A; 
#chains in the Genus database with same CATH topology
 4QA8 A;  2V43 A;  1IWN A;  3WJV A;  3BUU A;  4Z48 A;  1UA8 A;  2ZF3 A;  2W7Q A;  3MHA A;  3MH8 A;  4KI3 A;  3M4W A;  3WJU A;  4ZRA A;  3WJT A;  3BMZ A;  2ZPC A;  2ZF4 A;  4EGD A;  1IWL A;  4MXT A;  3KSN A;  2BYO A;  3MH9 A;  2YZY A;  3BK5 A;  2V42 A;  2ZPD A;  4EG9 A;  1IWM A;  2P4B A; 
#chains in the Genus database with same CATH homology
 4QA8 A;  3MH8 A;  2BYO A;  3BMZ A;  3MH9 A;  2ZF4 A;  4EGD A;  4EG9 A;  2ZF3 A;  4ZRA A;  3MHA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4EGDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations