4GCYA

Structure of mycobacterium tuberculosis dutpase h21w mutant
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
163
structure length
163
Chain Sequence
SGLVPRGSHMSTTLAIVRLDPGLPLPSRAWDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (6-9)TVIII1 (9-12)TII1 (21-24)TVIII2 (19-22)S5 (57-63)S10 (109-118)S2 (27-31)S3 (35-37)S4 (41-52)TII2 (38-41)TII3 (54-57)AH1 (65-71)TIV3 (127-130)S8 (90-96)S6 (73-75)TIV1 (77-80)S7 (80-82)TII4 (106-109)TI4 (83-86)S9 (103-105)TIV2 (98-101)TI5 (138-141)TI'1 (144-147)TI6 (146-149)TI3 (75-78)TII'1 (140-143)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
publication title RAMD identification of substrate binding pathways to the active site of dUTPase
rcsb
molecule keywords Deoxyuridine 5'-triphosphate nucleotidohydrolase
total genus 24
structure length 163
sequence length 163
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2012-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 4gcyA01
4WRKA 1SLHA 3H6XA 2YZJA 2OKEA 3TRNA 1PKKA 5F9KA 2J4HA 2ZDCA 2HXDA 5ECTA 3TTAA 2XCEA 1XS1A 2Y8CA 2PY4A 2BSYA 3MBQA 1Q5HA 1SNFA 2BAZA 2XX6A 4LHRA 1SM8A 2D4NA 3I93A 2HXBA 1F7QA 3ZF5A 3MDXA 3C2TA 2WE0A 2D4MA 1EU5A 3TPWA 3ZF2A 2D4LA 4XJCA 2WE3A 4AOOA 3GF0A 5EDDA 3T64A 2HQUA 1XS4A 3ARNA 4A6AA 2OKBA 1F7DA 3SO2A 4OOQA 3TQ5A 1SJNA 1SEHA 3EHWA 3ZF6A 1DUNA 3H6DA 1F7OA 1RN8A 1EUWA 3KM3A 5CCTA 3TQ3A 1Q5UX 3TQ4A 3ZEZA 1DUCA 2BT1A 1F7RA 1SYLA 1PKHA 3ZF0A 3T60A 4AOZA 3ZF4A 1DUTA 3TPNA 2XCDA 3ZF3A 4DHKA 3ARAA 3CA9A 1DUDA 1DUPA 2HRMA 3TS6A 2R9QA 2QLPA 3HHQA 4GK6A 1MQ7A 4GV8A 3T6YA 3TP1A 3TPSA 3P48A 3LOJA 2QXXA 3HZAA 1OGHA 3TQZA 2J4QA 2WE1A 1PKJA 3F4FA 2XY3A 3ECYA 3C3IA 4APZ1 1F7KA 2WE2A 2OL0A 2V9XA 4B0HA 1RNJA 4GCYA 3TPYA 5CCOA 1XS6A 3LQWA 1F7NA 4AO5A 2OKDA 1VYQA 1SMCA 3TRLA 2HR6A 3T70A 3ZF1A 3TSLA 4OOPA 1F7PA 2Y1TA 2PC5A 1SIXA 2OL1A
chains in the Genus database with same CATH superfamily
4WRKA 1SLHA 3H6XA 2YZJA 2OKEA 3TRNA 1PKKA 5F9KA 2J4HA 2ZDCA 2HXDA 5ECTA 3TTAA 2XCEA 1XS1A 2Y8CA 2PY4A 2BSYA 3MBQA 1Q5HA 1SNFA 2BAZA 2XX6A 4LHRA 1SM8A 2D4NA 3I93A 2HXBA 1F7QA 3ZF5A 3MDXA 3C2TA 2WE0A 2D4MA 1EU5A 3TPWA 3ZF2A 2D4LA 4XJCA 2WE3A 4AOOA 3GF0A 5EDDA 3T64A 2HQUA 1XS4A 3ARNA 4A6AA 2OKBA 1F7DA 3SO2A 4OOQA 3TQ5A 1SJNA 1SEHA 3EHWA 3ZF6A 1DUNA 3H6DA 1F7OA 1RN8A 1EUWA 3KM3A 5CCTA 3TQ3A 1Q5UX 3TQ4A 3ZEZA 1DUCA 2BT1A 1F7RA 1SYLA 1PKHA 3ZF0A 3T60A 4AOZA 3ZF4A 1DUTA 3TPNA 2XCDA 3ZF3A 4DHKA 3ARAA 3CA9A 1DUDA 1DUPA 2HRMA 3TS6A 2R9QA 2QLPA 3HHQA 4GK6A 1MQ7A 4GV8A 3T6YA 3TP1A 3TPSA 3P48A 3LOJA 2QXXA 3HZAA 1OGHA 3TQZA 2J4QA 2WE1A 1PKJA 3F4FA 2XY3A 3ECYA 3C3IA 4APZ1 1TULA 1F7KA 2WE2A 2OL0A 2V9XA 4B0HA 1RNJA 4GCYA 3TPYA 5CCOA 1XS6A 3LQWA 1F7NA 4AO5A 2OKDA 1VYQA 1SMCA 3TRLA 2HR6A 3T70A 3ZF1A 3TSLA 4OOPA 1F7PA 2Y1TA 2PC5A 1SIXA 2OL1A
chains in the Genus database with same CATH topology
4WRKA 1SLHA 3H6XA 2YZJA 2OKEA 3TRNA 1PKKA 5F9KA 2J4HA 2ZDCA 2HXDA 5ECTA 3TTAA 2XCEA 1XS1A 2Y8CA 2PY4A 2BSYA 3MBQA 1Q5HA 1SNFA 2BAZA 2XX6A 4LHRA 1SM8A 2D4NA 3I93A 2HXBA 1F7QA 3ZF5A 3MDXA 3C2TA 2WE0A 2D4MA 1EU5A 3TPWA 3ZF2A 2D4LA 4XJCA 2WE3A 4AOOA 3GF0A 5EDDA 3T64A 2HQUA 1XS4A 3ARNA 4A6AA 2OKBA 1F7DA 3SO2A 4OOQA 3TQ5A 1SJNA 1SEHA 3EHWA 3ZF6A 1DUNA 3H6DA 1F7OA 1RN8A 1EUWA 3KM3A 5CCTA 3TQ3A 1Q5UX 3TQ4A 3ZEZA 1DUCA 2BT1A 1F7RA 1SYLA 1PKHA 3ZF0A 3T60A 4AOZA 3ZF4A 1DUTA 3TPNA 2XCDA 3ZF3A 4DHKA 3ARAA 3CA9A 1DUDA 1DUPA 2HRMA 3TS6A 2R9QA 2QLPA 3HHQA 4GK6A 1MQ7A 4GV8A 3T6YA 3TP1A 3TPSA 3P48A 3LOJA 2QXXA 3HZAA 1OGHA 3TQZA 2J4QA 2WE1A 1PKJA 3F4FA 2XY3A 3ECYA 3C3IA 4APZ1 1F7KA 2WE2A 2OL0A 2V9XA 4B0HA 1RNJA 4GCYA 3TPYA 5CCOA 1XS6A 3LQWA 1F7NA 4AO5A 2OKDA 1VYQA 1SMCA 3TRLA 2HR6A 3T70A 3ZF1A 3TSLA 4OOPA 1F7PA 2Y1TA 2PC5A 1SIXA 2OL1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WRK A;  1SLH A;  3H6X A;  2YZJ A;  2OKE A;  3TRN A;  1PKK A;  5F9K A;  2J4H A;  2ZDC A;  2HXD A;  5ECT A;  3TTA A;  2XCE A;  1XS1 A;  2Y8C A;  2PY4 A;  2BSY A;  3MBQ A;  1Q5H A;  1SNF A;  2BAZ A;  2XX6 A;  4LHR A;  1SM8 A;  2D4N A;  3I93 A;  2HXB A;  1F7Q A;  3ZF5 A;  3MDX A;  3C2T A;  2WE0 A;  2D4M A;  1EU5 A;  3TPW A;  3ZF2 A;  2D4L A;  4XJC A;  2WE3 A;  4AOO A;  3GF0 A;  5EDD A;  3T64 A;  2HQU A;  1XS4 A;  3ARN A;  4A6A A;  2OKB A;  1F7D A;  3SO2 A;  4OOQ A;  3TQ5 A;  1SJN A;  1SEH A;  3EHW A;  3ZF6 A;  1DUN A;  3H6D A;  1F7O A;  1RN8 A;  1EUW A;  3KM3 A;  5CCT A;  3TQ3 A;  1Q5U X;  3TQ4 A;  3ZEZ A;  1DUC A;  2BT1 A;  1F7R A;  1SYL A;  1PKH A;  3ZF0 A;  3T60 A;  4AOZ A;  3ZF4 A;  1DUT A;  3TPN A;  2XCD A;  3ZF3 A;  4DHK A;  3ARA A;  3CA9 A;  1DUD A;  1DUP A;  2HRM A;  3TS6 A;  2R9Q A;  2QLP A;  3HHQ A;  4GK6 A;  1MQ7 A;  4GV8 A;  3T6Y A;  3TP1 A;  3TPS A;  3P48 A;  3LOJ A;  2QXX A;  3HZA A;  1OGH A;  3TQZ A;  2J4Q A;  2WE1 A;  1PKJ A;  3F4F A;  2XY3 A;  3ECY A;  3C3I A;  4APZ 1;  1F7K A;  2WE2 A;  2OL0 A;  2V9X A;  4B0H A;  1RNJ A;  4GCY A;  3TPY A;  5CCO A;  1XS6 A;  3LQW A;  1F7N A;  4AO5 A;  2OKD A;  1VYQ A;  1SMC A;  3TRL A;  2HR6 A;  3T70 A;  3ZF1 A;  3TSL A;  4OOP A;  1F7P A;  2Y1T A;  2PC5 A;  1SIX A;  2OL1 A; 
#chains in the Genus database with same CATH topology
 4WRK A;  1SLH A;  3H6X A;  2YZJ A;  2OKE A;  3TRN A;  1PKK A;  5F9K A;  2J4H A;  2ZDC A;  2HXD A;  5ECT A;  3TTA A;  2XCE A;  1XS1 A;  2Y8C A;  2PY4 A;  2BSY A;  3MBQ A;  1Q5H A;  1SNF A;  2BAZ A;  2XX6 A;  4LHR A;  1SM8 A;  2D4N A;  3I93 A;  2HXB A;  1F7Q A;  3ZF5 A;  3MDX A;  3C2T A;  2WE0 A;  2D4M A;  1EU5 A;  3TPW A;  3ZF2 A;  2D4L A;  4XJC A;  2WE3 A;  4AOO A;  3GF0 A;  5EDD A;  3T64 A;  2HQU A;  1XS4 A;  3ARN A;  4A6A A;  2OKB A;  1F7D A;  3SO2 A;  4OOQ A;  3TQ5 A;  1SJN A;  1SEH A;  3EHW A;  3ZF6 A;  1DUN A;  3H6D A;  1F7O A;  1RN8 A;  1EUW A;  3KM3 A;  5CCT A;  3TQ3 A;  1Q5U X;  3TQ4 A;  3ZEZ A;  1DUC A;  2BT1 A;  1F7R A;  1SYL A;  1PKH A;  3ZF0 A;  3T60 A;  4AOZ A;  3ZF4 A;  1DUT A;  3TPN A;  2XCD A;  3ZF3 A;  4DHK A;  3ARA A;  3CA9 A;  1DUD A;  1DUP A;  2HRM A;  3TS6 A;  2R9Q A;  2QLP A;  3HHQ A;  4GK6 A;  1MQ7 A;  4GV8 A;  3T6Y A;  3TP1 A;  3TPS A;  3P48 A;  3LOJ A;  2QXX A;  3HZA A;  1OGH A;  3TQZ A;  2J4Q A;  2WE1 A;  1PKJ A;  3F4F A;  2XY3 A;  3ECY A;  3C3I A;  4APZ 1;  1TUL A;  1F7K A;  2WE2 A;  2OL0 A;  2V9X A;  4B0H A;  1RNJ A;  4GCY A;  3TPY A;  5CCO A;  1XS6 A;  3LQW A;  1F7N A;  4AO5 A;  2OKD A;  1VYQ A;  1SMC A;  3TRL A;  2HR6 A;  3T70 A;  3ZF1 A;  3TSL A;  4OOP A;  1F7P A;  2Y1T A;  2PC5 A;  1SIX A;  2OL1 A; 
#chains in the Genus database with same CATH homology
 4WRK A;  1SLH A;  3H6X A;  2YZJ A;  2OKE A;  3TRN A;  1PKK A;  5F9K A;  2J4H A;  2ZDC A;  2HXD A;  5ECT A;  3TTA A;  2XCE A;  1XS1 A;  2Y8C A;  2PY4 A;  2BSY A;  3MBQ A;  1Q5H A;  1SNF A;  2BAZ A;  2XX6 A;  4LHR A;  1SM8 A;  2D4N A;  3I93 A;  2HXB A;  1F7Q A;  3ZF5 A;  3MDX A;  3C2T A;  2WE0 A;  2D4M A;  1EU5 A;  3TPW A;  3ZF2 A;  2D4L A;  4XJC A;  2WE3 A;  4AOO A;  3GF0 A;  5EDD A;  3T64 A;  2HQU A;  1XS4 A;  3ARN A;  4A6A A;  2OKB A;  1F7D A;  3SO2 A;  4OOQ A;  3TQ5 A;  1SJN A;  1SEH A;  3EHW A;  3ZF6 A;  1DUN A;  3H6D A;  1F7O A;  1RN8 A;  1EUW A;  3KM3 A;  5CCT A;  3TQ3 A;  1Q5U X;  3TQ4 A;  3ZEZ A;  1DUC A;  2BT1 A;  1F7R A;  1SYL A;  1PKH A;  3ZF0 A;  3T60 A;  4AOZ A;  3ZF4 A;  1DUT A;  3TPN A;  2XCD A;  3ZF3 A;  4DHK A;  3ARA A;  3CA9 A;  1DUD A;  1DUP A;  2HRM A;  3TS6 A;  2R9Q A;  2QLP A;  3HHQ A;  4GK6 A;  1MQ7 A;  4GV8 A;  3T6Y A;  3TP1 A;  3TPS A;  3P48 A;  3LOJ A;  2QXX A;  3HZA A;  1OGH A;  3TQZ A;  2J4Q A;  2WE1 A;  1PKJ A;  3F4F A;  2XY3 A;  3ECY A;  3C3I A;  4APZ 1;  1F7K A;  2WE2 A;  2OL0 A;  2V9X A;  4B0H A;  1RNJ A;  4GCY A;  3TPY A;  5CCO A;  1XS6 A;  3LQW A;  1F7N A;  4AO5 A;  2OKD A;  1VYQ A;  1SMC A;  3TRL A;  2HR6 A;  3T70 A;  3ZF1 A;  3TSL A;  4OOP A;  1F7P A;  2Y1T A;  2PC5 A;  1SIX A;  2OL1 A; 
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