4LHRA

Crystal structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase from burkholderia thailandensis
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
134
structure length
134
Chain Sequence
HHMKLDLKILDARMRDYLPKYATTGSAGLDLRACLDAPVTLKPGDTALVPTGLAIHLADPGYAALILPRSGLGHKHGIVLGNLVGLIDSDYQGELMISTWNRGQTEFVLNPFERLAQLVIVPVVQATFNIVGDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (55-57)S1 (4-7)S4 (43-54)TVIII1 (7-10)TI1 (12-15)TIV3 (33-36)EMPTYS2 (26-31)TIV2 (19-22)TI2 (21-24)S3 (37-39)TII2 (108-111)TII1 (40-43)S9 (105-107)TI3 (57-60)TI5 (86-89)S5 (60-66)S10 (111-120)S7 (83-85)S6 (76-78)TI4 (78-81)S8 (93-99)TIV4 (80-83)3H1 (10-12)AH1 (68-74)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Burkholderia thailandensis
publication title Crystal structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase from Burkholderia thailandensis
rcsb
molecule keywords Deoxyuridine 5'-triphosphate nucleotidohydrolase
total genus 22
structure length 134
sequence length 134
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2013-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 4lhrA00
2WE1A 2WE0A 1RNJA 1PKKA 1XS1A 2YZJA 2HQUA 3EHWA 3HHQA 3ZF6A 2D4MA 3TRNA 3TQ5A 3ZF1A 2Y1TA 3F4FA 3I93A 1Q5HA 2R9QA 1MQ7A 4WRKA 1PKJA 3ZF2A 2HXBA 2OKEA 3H6DA 3T60A 2J4HA 1SLHA 5ECTA 2OKBA 3LQWA 4B0HA 3TP1A 1F7DA 1RN8A 3ZF3A 3T64A 2BSYA 4AOZA 4OOQA 2WE2A 2OL1A 4OOPA 1SJNA 1F7OA 2WE3A 3MDXA 2D4NA 4XJCA 5CCOA 3SO2A 3ZEZA 1EUWA 3ECYA 3T70A 1EU5A 3TPNA 1VYQA 4GK6A 4GCYA 2QLPA 4LHRA 1DUTA 1F7RA 3TPWA 2PY4A 3ZF5A 2HRMA 3KM3A 3ZF0A 1F7QA 2XY3A 2J4QA 3HZAA 1F7PA 3TPSA 2QXXA 3MBQA 3TS6A 2D4LA 2ZDCA 1F7KA 4GV8A 2Y8CA 3ZF4A 4DHKA 2OL0A 3CA9A 2OKDA 3ARNA 1PKHA 2HXDA 3GF0A 1XS4A 3LOJA 5CCTA 1SMCA 3TRLA 2BAZA 2HR6A 3TQZA 2XX6A 1DUCA 2PC5A 3TQ3A 3H6XA 2BT1A 1SIXA 1SNFA 3P48A 3TPYA 2XCEA 3TTAA 1DUDA 1Q5UX 1SM8A 1OGHA 3TSLA 4AOOA 3C2TA 4A6AA 1DUPA 1XS6A 3T6YA 4AO5A 5F9KA 5EDDA 1DUNA 1SEHA 4APZ1 2XCDA 1SYLA 2V9XA 3ARAA 3C3IA 1F7NA 3TQ4A
chains in the Genus database with same CATH superfamily
2WE1A 2WE0A 1RNJA 1PKKA 1XS1A 2YZJA 2HQUA 3EHWA 3HHQA 3ZF6A 2D4MA 3TRNA 3TQ5A 3ZF1A 2Y1TA 3F4FA 3I93A 1Q5HA 2R9QA 1MQ7A 4WRKA 1PKJA 3ZF2A 2HXBA 2OKEA 3H6DA 3T60A 2J4HA 1SLHA 5ECTA 2OKBA 3LQWA 4B0HA 3TP1A 1F7DA 1RN8A 3ZF3A 3T64A 2BSYA 4AOZA 4OOQA 2WE2A 2OL1A 4OOPA 1SJNA 1F7OA 2WE3A 3MDXA 2D4NA 4XJCA 5CCOA 3SO2A 3ZEZA 1EUWA 3ECYA 3T70A 1EU5A 3TPNA 1VYQA 4GK6A 4GCYA 2QLPA 4LHRA 1DUTA 1F7RA 3TPWA 2PY4A 3ZF5A 2HRMA 3KM3A 3ZF0A 1F7QA 2XY3A 2J4QA 3HZAA 1F7PA 3TPSA 2QXXA 3MBQA 3TS6A 2D4LA 2ZDCA 1F7KA 4GV8A 2Y8CA 3ZF4A 4DHKA 2OL0A 3CA9A 2OKDA 3ARNA 1PKHA 2HXDA 3GF0A 1XS4A 3LOJA 5CCTA 1SMCA 3TRLA 2BAZA 2HR6A 3TQZA 2XX6A 1DUCA 2PC5A 3TQ3A 3H6XA 2BT1A 1SIXA 1SNFA 3P48A 3TPYA 2XCEA 3TTAA 1DUDA 1Q5UX 1SM8A 1OGHA 3TSLA 4AOOA 3C2TA 4A6AA 1DUPA 1XS6A 3T6YA 4AO5A 5F9KA 5EDDA 1DUNA 1SEHA 4APZ1 2XCDA 1SYLA 2V9XA 1TULA 3ARAA 3C3IA 1F7NA 3TQ4A
chains in the Genus database with same CATH topology
2WE1A 2WE0A 1RNJA 1PKKA 1XS1A 2YZJA 2HQUA 3EHWA 3HHQA 3ZF6A 2D4MA 3TRNA 3TQ5A 3ZF1A 2Y1TA 3F4FA 3I93A 1Q5HA 2R9QA 1MQ7A 4WRKA 1PKJA 3ZF2A 2HXBA 2OKEA 3H6DA 3T60A 2J4HA 1SLHA 5ECTA 2OKBA 3LQWA 4B0HA 3TP1A 1F7DA 1RN8A 3ZF3A 3T64A 2BSYA 4AOZA 4OOQA 2WE2A 2OL1A 4OOPA 1SJNA 1F7OA 2WE3A 3MDXA 2D4NA 4XJCA 5CCOA 3SO2A 3ZEZA 1EUWA 3ECYA 3T70A 1EU5A 3TPNA 1VYQA 4GK6A 4GCYA 2QLPA 4LHRA 1DUTA 1F7RA 3TPWA 2PY4A 3ZF5A 2HRMA 3KM3A 3ZF0A 1F7QA 2XY3A 2J4QA 3HZAA 1F7PA 3TPSA 2QXXA 3MBQA 3TS6A 2D4LA 2ZDCA 1F7KA 4GV8A 2Y8CA 3ZF4A 4DHKA 2OL0A 3CA9A 2OKDA 3ARNA 1PKHA 2HXDA 3GF0A 1XS4A 3LOJA 5CCTA 1SMCA 3TRLA 2BAZA 2HR6A 3TQZA 2XX6A 1DUCA 2PC5A 3TQ3A 3H6XA 2BT1A 1SIXA 1SNFA 3P48A 3TPYA 2XCEA 3TTAA 1DUDA 1Q5UX 1SM8A 1OGHA 3TSLA 4AOOA 3C2TA 4A6AA 1DUPA 1XS6A 3T6YA 4AO5A 5F9KA 5EDDA 1DUNA 1SEHA 4APZ1 2XCDA 1SYLA 2V9XA 3ARAA 3C3IA 1F7NA 3TQ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WE1 A;  2WE0 A;  1RNJ A;  1PKK A;  1XS1 A;  2YZJ A;  2HQU A;  3EHW A;  3HHQ A;  3ZF6 A;  2D4M A;  3TRN A;  3TQ5 A;  3ZF1 A;  2Y1T A;  3F4F A;  3I93 A;  1Q5H A;  2R9Q A;  1MQ7 A;  4WRK A;  1PKJ A;  3ZF2 A;  2HXB A;  2OKE A;  3H6D A;  3T60 A;  2J4H A;  1SLH A;  5ECT A;  2OKB A;  3LQW A;  4B0H A;  3TP1 A;  1F7D A;  1RN8 A;  3ZF3 A;  3T64 A;  2BSY A;  4AOZ A;  4OOQ A;  2WE2 A;  2OL1 A;  4OOP A;  1SJN A;  1F7O A;  2WE3 A;  3MDX A;  2D4N A;  4XJC A;  5CCO A;  3SO2 A;  3ZEZ A;  1EUW A;  3ECY A;  3T70 A;  1EU5 A;  3TPN A;  1VYQ A;  4GK6 A;  4GCY A;  2QLP A;  4LHR A;  1DUT A;  1F7R A;  3TPW A;  2PY4 A;  3ZF5 A;  2HRM A;  3KM3 A;  3ZF0 A;  1F7Q A;  2XY3 A;  2J4Q A;  3HZA A;  1F7P A;  3TPS A;  2QXX A;  3MBQ A;  3TS6 A;  2D4L A;  2ZDC A;  1F7K A;  4GV8 A;  2Y8C A;  3ZF4 A;  4DHK A;  2OL0 A;  3CA9 A;  2OKD A;  3ARN A;  1PKH A;  2HXD A;  3GF0 A;  1XS4 A;  3LOJ A;  5CCT A;  1SMC A;  3TRL A;  2BAZ A;  2HR6 A;  3TQZ A;  2XX6 A;  1DUC A;  2PC5 A;  3TQ3 A;  3H6X A;  2BT1 A;  1SIX A;  1SNF A;  3P48 A;  3TPY A;  2XCE A;  3TTA A;  1DUD A;  1Q5U X;  1SM8 A;  1OGH A;  3TSL A;  4AOO A;  3C2T A;  4A6A A;  1DUP A;  1XS6 A;  3T6Y A;  4AO5 A;  5F9K A;  5EDD A;  1DUN A;  1SEH A;  4APZ 1;  2XCD A;  1SYL A;  2V9X A;  3ARA A;  3C3I A;  1F7N A;  3TQ4 A; 
#chains in the Genus database with same CATH topology
 2WE1 A;  2WE0 A;  1RNJ A;  1PKK A;  1XS1 A;  2YZJ A;  2HQU A;  3EHW A;  3HHQ A;  3ZF6 A;  2D4M A;  3TRN A;  3TQ5 A;  3ZF1 A;  2Y1T A;  3F4F A;  3I93 A;  1Q5H A;  2R9Q A;  1MQ7 A;  4WRK A;  1PKJ A;  3ZF2 A;  2HXB A;  2OKE A;  3H6D A;  3T60 A;  2J4H A;  1SLH A;  5ECT A;  2OKB A;  3LQW A;  4B0H A;  3TP1 A;  1F7D A;  1RN8 A;  3ZF3 A;  3T64 A;  2BSY A;  4AOZ A;  4OOQ A;  2WE2 A;  2OL1 A;  4OOP A;  1SJN A;  1F7O A;  2WE3 A;  3MDX A;  2D4N A;  4XJC A;  5CCO A;  3SO2 A;  3ZEZ A;  1EUW A;  3ECY A;  3T70 A;  1EU5 A;  3TPN A;  1VYQ A;  4GK6 A;  4GCY A;  2QLP A;  4LHR A;  1DUT A;  1F7R A;  3TPW A;  2PY4 A;  3ZF5 A;  2HRM A;  3KM3 A;  3ZF0 A;  1F7Q A;  2XY3 A;  2J4Q A;  3HZA A;  1F7P A;  3TPS A;  2QXX A;  3MBQ A;  3TS6 A;  2D4L A;  2ZDC A;  1F7K A;  4GV8 A;  2Y8C A;  3ZF4 A;  4DHK A;  2OL0 A;  3CA9 A;  2OKD A;  3ARN A;  1PKH A;  2HXD A;  3GF0 A;  1XS4 A;  3LOJ A;  5CCT A;  1SMC A;  3TRL A;  2BAZ A;  2HR6 A;  3TQZ A;  2XX6 A;  1DUC A;  2PC5 A;  3TQ3 A;  3H6X A;  2BT1 A;  1SIX A;  1SNF A;  3P48 A;  3TPY A;  2XCE A;  3TTA A;  1DUD A;  1Q5U X;  1SM8 A;  1OGH A;  3TSL A;  4AOO A;  3C2T A;  4A6A A;  1DUP A;  1XS6 A;  3T6Y A;  4AO5 A;  5F9K A;  5EDD A;  1DUN A;  1SEH A;  4APZ 1;  2XCD A;  1SYL A;  2V9X A;  1TUL A;  3ARA A;  3C3I A;  1F7N A;  3TQ4 A; 
#chains in the Genus database with same CATH homology
 2WE1 A;  2WE0 A;  1RNJ A;  1PKK A;  1XS1 A;  2YZJ A;  2HQU A;  3EHW A;  3HHQ A;  3ZF6 A;  2D4M A;  3TRN A;  3TQ5 A;  3ZF1 A;  2Y1T A;  3F4F A;  3I93 A;  1Q5H A;  2R9Q A;  1MQ7 A;  4WRK A;  1PKJ A;  3ZF2 A;  2HXB A;  2OKE A;  3H6D A;  3T60 A;  2J4H A;  1SLH A;  5ECT A;  2OKB A;  3LQW A;  4B0H A;  3TP1 A;  1F7D A;  1RN8 A;  3ZF3 A;  3T64 A;  2BSY A;  4AOZ A;  4OOQ A;  2WE2 A;  2OL1 A;  4OOP A;  1SJN A;  1F7O A;  2WE3 A;  3MDX A;  2D4N A;  4XJC A;  5CCO A;  3SO2 A;  3ZEZ A;  1EUW A;  3ECY A;  3T70 A;  1EU5 A;  3TPN A;  1VYQ A;  4GK6 A;  4GCY A;  2QLP A;  4LHR A;  1DUT A;  1F7R A;  3TPW A;  2PY4 A;  3ZF5 A;  2HRM A;  3KM3 A;  3ZF0 A;  1F7Q A;  2XY3 A;  2J4Q A;  3HZA A;  1F7P A;  3TPS A;  2QXX A;  3MBQ A;  3TS6 A;  2D4L A;  2ZDC A;  1F7K A;  4GV8 A;  2Y8C A;  3ZF4 A;  4DHK A;  2OL0 A;  3CA9 A;  2OKD A;  3ARN A;  1PKH A;  2HXD A;  3GF0 A;  1XS4 A;  3LOJ A;  5CCT A;  1SMC A;  3TRL A;  2BAZ A;  2HR6 A;  3TQZ A;  2XX6 A;  1DUC A;  2PC5 A;  3TQ3 A;  3H6X A;  2BT1 A;  1SIX A;  1SNF A;  3P48 A;  3TPY A;  2XCE A;  3TTA A;  1DUD A;  1Q5U X;  1SM8 A;  1OGH A;  3TSL A;  4AOO A;  3C2T A;  4A6A A;  1DUP A;  1XS6 A;  3T6Y A;  4AO5 A;  5F9K A;  5EDD A;  1DUN A;  1SEH A;  4APZ 1;  2XCD A;  1SYL A;  2V9X A;  3ARA A;  3C3I A;  1F7N A;  3TQ4 A; 
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