4M5C | Genus

Total Genus 81

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	81
sequence length	214
structure length	214
Chain Sequence	MHIPEGYLSPQTCAVMGAAMVPVLTVAAKKVNKSFDKKDVPAMAIGSAFAFTIMMFNVPIPGGTTAHAIGATLLATTLGPWAASISLTLALFIQALLFGDGGILALGANSFNMAFIAPFVGYGIYRLMLSLKLNKVLSSAIGGYVGINAAALATAIELGLQPLLFHTANGTPLYFPYGLNVAIPAMMFAHLTVAGIVEAVITGLVVYYLLEHHH

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__955869359300758__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__955869359300758__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4M5C/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__955869359300758__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"955869359300758","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4M5C/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__955869359300758__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Thermoanaerobacter tengcongensis
publication title	Planar substrate-binding site dictates the specificity of ECF-type nickel/cobalt transporters pubmed doi rcsb
molecule keywords	Cobalamin biosynthesis protein CbiM
total genus	81
structure length	214
sequence length	214
ec nomenclature
pdb deposition date	2013-08-08

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1760.20	Mainly Alpha	Orthogonal Bundle	Arp2/3 complex 21 kDa subunit ARPC3	Arp2/3 complex 21 kDa subunit ARPC3	4m5cA00

4POVA 4HUQS 4M58A 5KC4A 5KBWA 3P5NA 4M5CA 4RFSS 4MHWA 4N4DA 5D0YA 4HZUS 4MUUA 4DVEA 5JSZC 5KC0A 4MESA 4Z7FA 4TKRA 3RLBA 4M5BA 5D3MC 4POPA
chains in the Genus database with same CATH superfamily

1U2VE 2P9PE 4POVA 4HUQS 1K8KE 4M58A 5KC4A 5KBWA 3P5NA 3DXKE 2P9UE 4M5CA 4RFSS 3DXME 1TYQE 4MHWA 2P9NE 4N4DA 5D0YA 5D3MC 3ULEE 3UKUE 4HZUS 4XEIE 4MUUA 4DVEA 5JSZC 5KC0A 3UKRE 2P9IE 2P9KE 2P9SE 4JD2E 4TKRA 3RLBA 4Z7FA 3RSEE 4M5BA 4MESA 4POPA 2P9LE
chains in the Genus database with same CATH topology

4POVA 4HUQS 4M58A 5KC4A 5KBWA 3P5NA 4M5CA 4RFSS 4MHWA 4N4DA 5D0YA 4HZUS 4MUUA 4DVEA 5JSZC 5KC0A 4MESA 4Z7FA 4TKRA 3RLBA 4M5BA 5D3MC 4POPA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4POV A;  4HUQ S;  4M58 A;  5KC4 A;  5KBW A;  3P5N A;  4M5C A;  4RFS S;  4MHW A;  4N4D A;  5D0Y A;  4HZU S;  4MUU A;  4DVE A;  5JSZ C;  5KC0 A;  4MES A;  4Z7F A;  4TKR A;  3RLB A;  4M5B A;  5D3M C;  4POP A; 
#chains in the Genus database with same CATH topology
 1U2V E;  2P9P E;  4POV A;  4HUQ S;  1K8K E;  4M58 A;  5KC4 A;  5KBW A;  3P5N A;  3DXK E;  2P9U E;  4M5C A;  4RFS S;  3DXM E;  1TYQ E;  4MHW A;  2P9N E;  4N4D A;  5D0Y A;  5D3M C;  3ULE E;  3UKU E;  4HZU S;  4XEI E;  4MUU A;  4DVE A;  5JSZ C;  5KC0 A;  3UKR E;  2P9I E;  2P9K E;  2P9S E;  4JD2 E;  4TKR A;  3RLB A;  4Z7F A;  3RSE E;  4M5B A;  4MES A;  4POP A;  2P9L E; 
#chains in the Genus database with same CATH homology
 4POV A;  4HUQ S;  4M58 A;  5KC4 A;  5KBW A;  3P5N A;  4M5C A;  4RFS S;  4MHW A;  4N4D A;  5D0Y A;  4HZU S;  4MUU A;  4DVE A;  5JSZ C;  5KC0 A;  4MES A;  4Z7F A;  4TKR A;  3RLB A;  4M5B A;  5D3M C;  4POP A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4M5CA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN